Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H02_e496_16.seq
         (1474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0043 - 27284814-27285190,27285287-27285488,27285576-272856...    29   9.3  
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291...    29   9.3  

>05_07_0043 -
           27284814-27285190,27285287-27285488,27285576-27285650,
           27285743-27285816,27285909-27285996,27286081-27286203,
           27288374-27288580,27288631-27288636
          Length = 383

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 703 QRPVTK*SPTHITKSITLAVDTGGEGQSMTPKTXHTVP 816
           ++P ++ +P +I+ +    + TGG  ++ TPKT   VP
Sbjct: 289 RKPFSQITPGNISSAPVRPISTGGTEENRTPKTFAPVP 326


>02_05_1131 -
           34328168-34328557,34328838-34328957,34329067-34329185,
           34329659-34329767,34329847-34329885,34341125-34341203,
           34341483-34341547,34341850-34341905,34342141-34342233,
           34342312-34342579
          Length = 445

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 24/90 (26%), Positives = 37/90 (41%)
 Frame = +3

Query: 228 DDDVYMCLKEKVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPKAREAQVE 407
           DDD      E +++  E LR++RE   +DG     +   R   A  P S   +       
Sbjct: 6   DDDGGRSRAEAIMRELERLRAEREE--LDGRIRLLESQLRLGAAPLPPSAAAEVEPTGSP 63

Query: 408 SRLVDSAADFLENYVIQFKMPSSAVEGIRR 497
           S    +AAD +  Y     +P   +EG R+
Sbjct: 64  SSSSSAAADMISRYRRHLLLPQFGLEGQRK 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,985,442
Number of Sequences: 37544
Number of extensions: 666734
Number of successful extensions: 1830
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1826
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4698853740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)