Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_H02_e496_16.seq
(1474 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.25
SB_23182| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 1.0
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 32 1.3
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 31 1.8
SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37) 31 3.1
SB_8170| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.1
SB_44958| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.1
SB_33552| Best HMM Match : MIF (HMM E-Value=9.7) 31 3.1
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.1
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 30 4.1
SB_40614| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.4
SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32) 30 5.4
SB_31266| Best HMM Match : PKI (HMM E-Value=1) 29 7.1
SB_32857| Best HMM Match : TolA (HMM E-Value=1.1) 29 9.4
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 34.3 bits (75), Expect = 0.25
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Frame = -1
Query: 532 IFFFLPRPSSRDLL---IPSTADDGILN*IT*FSKKSAAESTNLDSTCASLAFGSSDSGS 362
+ F LP P + DL+ P T G + F + AE ++DST + + GSS SG
Sbjct: 63 VSFSLP-PDNLDLVGSNTPPTLPPGYDSPADEFPNSNKAEDADIDSTSCTNSHGSSLSGR 121
Query: 361 KARADL-GEPLLSKVTPSIKVISLFDLKVSAYFKTFSLRHIYTSSST 224
+ D G+ + ++T V++L ++ K+F L + T
Sbjct: 122 RGLEDFKGDDIEDELTQLKAVVALRSIQKGDSPKSFDLSSVCDEGKT 168
>SB_23182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 32.3 bits (70), Expect = 1.0
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +2
Query: 5 LXLPRGGGRSXN*WXPPGCRXFGTRLS*GCWIERYEGLRGCPTFSRGGARDAH 163
L L RGGGRS PG + F L W+E Y+ CP G D +
Sbjct: 3 LELHRGGGRSRT-SGSPGLQEFDLSLRDDVWVESYKFAGFCPPHDFVGGEDKY 54
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 31.9 bits (69), Expect = 1.3
Identities = 17/52 (32%), Positives = 33/52 (63%)
Frame = +3
Query: 309 IDGVTLESKGSPRSARALEPLSDEPKAREAQVESRLVDSAADFLENYVIQFK 464
++ +T+ES+ RSA +L+ + D+ K R A+ E R VD+ + ++E+ + K
Sbjct: 1210 LEQLTMESEEMHRSASSLKAIVDKIKERLAESEDR-VDACSSYIEDLEKEIK 1260
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 31.5 bits (68), Expect = 1.8
Identities = 18/67 (26%), Positives = 36/67 (53%)
Frame = +3
Query: 309 IDGVTLESKGSPRSARALEPLSDEPKAREAQVESRLVDSAADFLENYVIQFKMPSSAVEG 488
++GV+ S+ S A+ LE L+ E + + +SRL +S A+ + + K+ +E
Sbjct: 739 LEGVSKASEQSKTHAQKLESLNKEQENKLVDAQSRLEESEAEGRKTAHL-LKLKEQKIES 797
Query: 489 IRRSLEE 509
+ + +EE
Sbjct: 798 LEKKVEE 804
>SB_31789| Best HMM Match : Ion_trans (HMM E-Value=6.3e-37)
Length = 583
Score = 30.7 bits (66), Expect = 3.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 115 FTRLSYF*SRRCARCPPNRNLQILESVAAFWALLRTVSTM 234
F+ + YF ++ + PPN+ Q AAFW L T++T+
Sbjct: 334 FSSVIYFTEQKMSDGPPNKPSQFSSIPAAFWYTLVTMTTL 373
>SB_8170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 222 CVDDDVYMC---LKEKVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPK 386
C D ++ C KEK+ +YA+ R + +TL +G T+ K ++ P P+
Sbjct: 18 CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 75
>SB_44958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 222 CVDDDVYMC---LKEKVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPK 386
C D ++ C KEK+ +YA+ R + +TL +G T+ K ++ P P+
Sbjct: 72 CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 129
>SB_33552| Best HMM Match : MIF (HMM E-Value=9.7)
Length = 148
Score = 30.7 bits (66), Expect = 3.1
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +3
Query: 222 CVDDDVYMC---LKEKVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPK 386
C D ++ C KEK+ +YA+ R + +TL +G T+ K ++ P P+
Sbjct: 20 CADQEIRQCDQAAKEKMKQYADNKRYVKPLTLAEGDTVLVKRDESKRKSDTPYDARPR 77
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 30.3 bits (65), Expect = 4.1
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 692 GQELLQGNDTGYDERNLGEEDCFGCSKGDDTKEQRDESQN-LQLSDSKERQK 540
G+E+ G+D+ DE + D G + DD + DE+Q+ + DS++ K
Sbjct: 409 GEEVSSGSDSSTDEEGTDDGDEEGGEEDDDDDDDDDENQSGILAPDSQDGTK 460
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 30.3 bits (65), Expect = 4.1
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 222 CVDDDVYMCLKEKVLKYAETLRSKREITLIDGVTLESKGSPRS 350
CV D + C K+L Y ET+ K+ I ++ T+ +K S RS
Sbjct: 761 CVLQDEFYCSPAKILHYVETVFFKKLIAVVQ-KTVRAKQSQRS 802
>SB_40614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 29.9 bits (64), Expect = 5.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 102 SIQQPYESLVPNXLQPGGXH*XLERPPPR 16
S+ +PY+++ N PG LERPPPR
Sbjct: 29 SLARPYDNIASNSCSPGDPL-VLERPPPR 56
>SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)
Length = 788
Score = 29.9 bits (64), Expect = 5.4
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +3
Query: 258 KVLKYAETLRSKREITLIDGVTLESKGSPRSARALEPLSDEPKAREAQVESRLVDSAADF 437
+VL+ ++L E + + +E KG+ +A L +P+A E ++ RL
Sbjct: 152 RVLRITDSLLHGEEEEMRGWLLVEQKGALGTATVTRSLDTDPQASELVIQVRLAGGIGVS 211
Query: 438 LENYV 452
+ NYV
Sbjct: 212 VVNYV 216
>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
Length = 1507
Score = 29.5 bits (63), Expect = 7.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 1300 LXPPFXXPXPXKKXGPPSLVXXXXREPPXXPXRXSPPXPG 1419
L PP P P ++ GPPS + PP P R + P PG
Sbjct: 418 LKPP-SSPSPRRQTGPPS-PKPSRQPPPSSPQRIA-PTPG 454
>SB_32857| Best HMM Match : TolA (HMM E-Value=1.1)
Length = 448
Score = 29.1 bits (62), Expect = 9.4
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -3
Query: 656 DERNLGEEDCFGCSKGDDTKEQRDESQNLQLSDSKERQK 540
+ERN EED + D+ +++RDE +N + D ++++
Sbjct: 170 EERNNEEEDRHDEERNDEHEDRRDEERNKKDEDRHDKER 208
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,946,812
Number of Sequences: 59808
Number of extensions: 672101
Number of successful extensions: 1888
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1882
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4753799685
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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