Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_H01_e488_15.seq
         (1532 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    25   1.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   4.5  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    23   4.5  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 286 PDVVFVFGFKTNFGGGKSTG 345
           PD VF+  F+T+F  GK +G
Sbjct: 107 PDDVFIRKFETSFESGKPSG 126



 Score = 23.8 bits (49), Expect = 3.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 718 PLSPAGVIAKRPAPIALXNSCA 783
           P  P GV  KR  P AL  +CA
Sbjct: 52  PCPPQGVDLKRVLPEALQTNCA 73


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = +1

Query: 358 YDTLDLAKKFEPKHRLAR-------HGLYEKKRPTRKQRKERKNRMKK 480
           Y TL+L K+F   H L R       H L   +R  +   + R+ ++KK
Sbjct: 233 YQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 280


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = +1

Query: 358 YDTLDLAKKFEPKHRLAR-------HGLYEKKRPTRKQRKERKNRMKK 480
           Y TL+L K+F   H L R       H L   +R  +   + R+ ++KK
Sbjct: 15  YQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,618
Number of Sequences: 336
Number of extensions: 5155
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 46091250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)