Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G12_e575_14.seq
         (1549 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...   149   1e-36
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...   148   2e-36
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    29   1.3  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    29   2.3  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   3.0  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   9.2  

>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score =  149 bits (360), Expect = 1e-36
 Identities = 73/114 (64%), Positives = 83/114 (72%)
 Frame = +1

Query: 109 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 288
           MGRVRT             YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R
Sbjct: 1   MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60

Query: 289 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 450
           +    VRGIS KLQEEERER+D YVPEVS LE+D I VD DTKDMLK L + +I
Sbjct: 61  IQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score =  148 bits (359), Expect = 2e-36
 Identities = 76/132 (57%), Positives = 90/132 (68%)
 Frame = +1

Query: 109 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 288
           MGRVRT             YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R
Sbjct: 1   MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60

Query: 289 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 468
           +    VRGIS KLQEEERER+D YVPEVS LE D + VD DTKDMLK L +  I  +++ 
Sbjct: 61  IQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVL 119

Query: 469 QPATQGGYGGRR 504
            PA Q  +  R+
Sbjct: 120 APAPQERFRRRQ 131


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 324 LNRDSSHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE 190
           +NR   +L +  +  ++ G    FV + LS+ND NF+  P +G E
Sbjct: 228 MNRPQRYLTI--SKQRLAGSDPYFV-RSLSKNDKNFIMIPTVGYE 269


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 12/57 (21%)
 Frame = +1

Query: 331 EEERERRDNYV------PEVSALEQDIIE------VDSDTKDMLKMLDFSNINGLQL 465
           EEE+ER  NY+      P +S +E +++       +++ +     M+D SN  GLQL
Sbjct: 265 EEEKERSKNYLFTKIASPLLSVVEDELLSKHLDDLLENQSTGFFSMIDSSNFEGLQL 321


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -2

Query: 309 SHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE----VKSKPSVVFF 160
           SH+ + +T+ +  G P   V KR+   D N L +    IE    +KS P VV +
Sbjct: 37  SHVYLVQTNSKTDGSPITAVLKRMYSPDENALRFVKTEIETMELLKSNPHVVSY 90


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 298 SQVRGISIKLQEEERERRDNYVPEV 372
           S V  ISIK QEEER+R+     E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,137,280
Number of Sequences: 5004
Number of extensions: 64469
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 870174386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)