BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030725E6_G12_e575_14.seq (1549 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_07_0174 + 13815478-13815903 139 5e-33 03_01_0066 - 537729-538163 137 3e-32 02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114... 31 2.4 04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 30 5.7 >10_07_0174 + 13815478-13815903 Length = 141 Score = 139 bits (337), Expect = 5e-33 Identities = 67/128 (52%), Positives = 89/128 (69%) Frame = +1 Query: 109 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 288 MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGFTTHLMRR Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60 Query: 289 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 468 + VRGIS+KLQEEERERR ++VPE SALE + I VD +T +ML L +++ G++ Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQ 120 Query: 469 QPATQGGY 492 Q + Y Sbjct: 121 QEVSAPTY 128 >03_01_0066 - 537729-538163 Length = 144 Score = 137 bits (331), Expect = 3e-32 Identities = 67/122 (54%), Positives = 88/122 (72%) Frame = +1 Query: 109 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 288 MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRR 60 Query: 289 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 468 + VRGIS+KLQEEERERR ++VP+ SALE D I VD +T DML L +++ G+ + Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VR 119 Query: 469 QP 474 QP Sbjct: 120 QP 121 >02_04_0449 + 23010099-23010317,23010873-23010934,23011399-23011450, 23011803-23011917,23012024-23012118,23012852-23012958, 23013042-23013156,23014159-23014203,23014324-23014392 Length = 292 Score = 31.1 bits (67), Expect = 2.4 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -3 Query: 473 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADT 369 GC + +K+ +F+I LVSE S+I+C A T Sbjct: 148 GCGNAAVSKNVKNKVFSIDLVSEDPSVIACDMAHT 182 >04_04_0923 + 29441740-29441980,29442321-29442401,29442630-29442719, 29443123-29443203,29443721-29443774,29444062-29444111, 29444542-29444623,29444734-29444838,29445514-29445641, 29445726-29445797,29445887-29445937,29446029-29446100, 29446201-29446278,29446446-29447270,29447648-29448556 Length = 972 Score = 29.9 bits (64), Expect = 5.7 Identities = 19/64 (29%), Positives = 33/64 (51%) Frame = +1 Query: 271 THLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 450 T LM ++I SQ SI ++E N+V A + +I S T+D+ +D++N Sbjct: 311 TSLMEQIISSQP---SISEVQQEISTESNFVATPRAFQNSMILTTSRTEDIPFDMDYANT 367 Query: 451 NGLQ 462 N ++ Sbjct: 368 NQVE 371 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 29,449,297 Number of Sequences: 37544 Number of extensions: 460086 Number of successful extensions: 1025 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 958 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1020 length of database: 14,793,348 effective HSP length: 85 effective length of database: 11,602,108 effective search space used: 4988906440 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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