Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G12_e575_14.seq
         (1549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0174 + 13815478-13815903                                        139   5e-33
03_01_0066 - 537729-538163                                            137   3e-32
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114...    31   2.4  
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427...    30   5.7  

>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  139 bits (337), Expect = 5e-33
 Identities = 67/128 (52%), Positives = 89/128 (69%)
 Frame = +1

Query: 109 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 288
           MGRVRT             YY+R+TLDF TNK++ EE++I+P+K LRNK+AGFTTHLMRR
Sbjct: 1   MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60

Query: 289 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 468
           +    VRGIS+KLQEEERERR ++VPE SALE + I VD +T +ML  L  +++ G++  
Sbjct: 61  IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQ 120

Query: 469 QPATQGGY 492
           Q  +   Y
Sbjct: 121 QEVSAPTY 128


>03_01_0066 - 537729-538163
          Length = 144

 Score =  137 bits (331), Expect = 3e-32
 Identities = 67/122 (54%), Positives = 88/122 (72%)
 Frame = +1

Query: 109 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 288
           MGRVRT             YY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR
Sbjct: 1   MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRR 60

Query: 289 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNINGLQLT 468
           +    VRGIS+KLQEEERERR ++VP+ SALE D I VD +T DML  L  +++ G+ + 
Sbjct: 61  IQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VR 119

Query: 469 QP 474
           QP
Sbjct: 120 QP 121


>02_04_0449 +
           23010099-23010317,23010873-23010934,23011399-23011450,
           23011803-23011917,23012024-23012118,23012852-23012958,
           23013042-23013156,23014159-23014203,23014324-23014392
          Length = 292

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 473 GCVSCRPLMLLKSSIFNISLVSESTSMISCSRADT 369
           GC +      +K+ +F+I LVSE  S+I+C  A T
Sbjct: 148 GCGNAAVSKNVKNKVFSIDLVSEDPSVIACDMAHT 182


>04_04_0923 +
           29441740-29441980,29442321-29442401,29442630-29442719,
           29443123-29443203,29443721-29443774,29444062-29444111,
           29444542-29444623,29444734-29444838,29445514-29445641,
           29445726-29445797,29445887-29445937,29446029-29446100,
           29446201-29446278,29446446-29447270,29447648-29448556
          Length = 972

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 19/64 (29%), Positives = 33/64 (51%)
 Frame = +1

Query: 271 THLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTKDMLKMLDFSNI 450
           T LM ++I SQ    SI   ++E     N+V    A +  +I   S T+D+   +D++N 
Sbjct: 311 TSLMEQIISSQP---SISEVQQEISTESNFVATPRAFQNSMILTTSRTEDIPFDMDYANT 367

Query: 451 NGLQ 462
           N ++
Sbjct: 368 NQVE 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,449,297
Number of Sequences: 37544
Number of extensions: 460086
Number of successful extensions: 1025
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4988906440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)