Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G10_e559_14.seq
         (1523 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0355 + 16922863-16924224                                         31   2.4  
09_04_0597 - 18859601-18859818,18860914-18861083,18861250-188613...    31   3.2  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   4.2  
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244...    29   7.3  
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557...    29   7.3  

>09_04_0355 + 16922863-16924224
          Length = 453

 Score = 31.1 bits (67), Expect = 2.4
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +1

Query: 127 GSLEFVPDMATGSP--PVTSGTELSSEIVGTHC 219
           G LE+V D+A G+P  P+T+  +  S+++ T C
Sbjct: 94  GDLEYVLDLAVGTPPQPITALLDTGSDLIWTQC 126


>09_04_0597 -
           18859601-18859818,18860914-18861083,18861250-18861303,
           18862759-18863284,18864465-18864663,18866787-18866852,
           18866999-18867300,18867394-18867634,18867716-18867973,
           18868076-18868207
          Length = 721

 Score = 30.7 bits (66), Expect = 3.2
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 182 PDVTGGEPVAISGTNSKLPG*Y*VEKPNITLPDP 81
           PDVT  +P  IS   S+L   + ++KPNI LP P
Sbjct: 526 PDVTCNDPEDISQDGSRL---WAIDKPNIALPPP 556


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 651 ITIHWPSFYNVV-TGKTLALPNLIALQH 731
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>11_06_0294 +
           22022630-22024006,22024109-22024234,22024319-22024423,
           22024525-22024659,22024798-22024847,22026487-22026545,
           22026819-22026928,22027941-22028174,22028278-22028377,
           22028699-22028829,22029834-22029914,22029970-22030128
          Length = 888

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 713 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 811
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 431


>11_06_0278 -
           21854859-21855101,21855529-21855587,21855684-21855711,
           21855812-21856702,21856792-21857011,21857638-21857687,
           21863174-21863284,21863379-21863483,21863568-21863693,
           21863796-21865187
          Length = 1074

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 713 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNG 811
           L+R +   PF SW N  +A  D+ +  L  LNG
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNG 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,829,038
Number of Sequences: 37544
Number of extensions: 692554
Number of successful extensions: 1468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4896089576
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)