Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G09_e551_13.seq
         (1508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    28   2.9  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    28   3.9  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   6.7  

>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 614 MVAQMTSWSFPLQTAL-PGILALFLG 688
           ++A + SW++PL  AL P I ALF G
Sbjct: 130 VIAALVSWNYPLHNALGPIISALFAG 155


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 344 YSSELKKSDSILSINIKEFVKDLWAFRTKITVEPF 448
           YS++ K+  SI++ NI   +K  ++   K +V PF
Sbjct: 375 YSNQYKEEPSIMNSNISNILKSGFSIGKKFSVVPF 409


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 572 RTENYIEEEKHTQIMVAQMTSWSFPLQTALPGI 670
           R + Y+  E  T+ +V   ++ SFP+ +  PGI
Sbjct: 247 RDDGYVANEVETEQIVFDGSASSFPISSTTPGI 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,292,693
Number of Sequences: 5004
Number of extensions: 77424
Number of successful extensions: 205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 844406124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)