Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G09_e551_13.seq
         (1508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1227 - 25398063-25398302,25398629-25398790,25399019-253991...    29   7.2  
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433...    29   9.6  

>08_02_1227 -
           25398063-25398302,25398629-25398790,25399019-25399150,
           25399909-25399961,25400465-25400942
          Length = 354

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 674 PRFPATRFAVENSNWSSGQPLSAYVSPPRCNSQCDPP 564
           P  P +R  +  S+  +G PL   ++PP  NSQ  PP
Sbjct: 312 PNSPPSRGTLSESSGGAGSPLHPGIAPPSSNSQ--PP 346


>07_03_0792 -
           21541301-21542143,21542426-21542661,21543177-21543373,
           21543459-21544173,21544250-21544892,21545970-21546139,
           21546442-21546943
          Length = 1101

 Score = 29.1 bits (62), Expect = 9.6
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
 Frame = -1

Query: 707 PSDRS-THRETVPRFPATRFAVENSNWSSGQPLSAYVSPPRCNSQCDPPLCACKFCCHIL 531
           P DRS     T    P T+   E    SSG P +A++            LC C F CH  
Sbjct: 360 PPDRSYKSAPTEKENPPTKSVAEKKKDSSGMP-NAFIGLSIAGIALMAHLCLCCFMCHGT 418

Query: 530 NSQGM 516
           +S  +
Sbjct: 419 SSSDL 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,473,284
Number of Sequences: 37544
Number of extensions: 583440
Number of successful extensions: 1380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4838079036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)