Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_G09_e551_13.seq
(1508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24) 50 6e-06
SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051) 45 2e-04
SB_51838| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 33 0.60
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.60
SB_43628| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.2
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 30 5.5
SB_51095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.3
SB_32120| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-32) 29 7.3
SB_22963| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.3
SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.7
>SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)
Length = 1193
Score = 49.6 bits (113), Expect = 6e-06
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Frame = +2
Query: 431 ITVEPFVICYVLPSVLAGLAVQNLC---LEKACLVNLEYDNK----TCKHI-MEGRTENY 586
ITVEP + CY +L +Q L + + EY+N TC+ I M +E
Sbjct: 39 ITVEPVIFCYAFGIILHVPVIQQYIHQRLSEGKGLTYEYNNTDSRTTCEPIQMANSSEET 98
Query: 587 IEEEKHTQIMVAQMTSWSFPLQTALPGIL-ALFLGAWSDRTGNRKPL 724
+E +K Q + M L + P +L AL LGAWSDR G R+ +
Sbjct: 99 LELQKEVQAEASYM-QMGLVLSVSTPSLLVALLLGAWSDRAGRRRAM 144
>SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051)
Length = 446
Score = 44.8 bits (101), Expect = 2e-04
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +2
Query: 431 ITVEPFVICYVLPSVLAGLAVQNLCLEKACLVNLEYDNKTCKHIMEGRTENYIEEEKHTQ 610
ITVEP + Y+ + ++ +Q L K C + Y+ C ++ + Y E+ + Q
Sbjct: 10 ITVEPVLFLYMFCTFMSSPLLQQLAYRKICKEH--YNTSACNNLSD-----YQNEQNYVQ 62
Query: 611 IMVAQMTSWSFPLQTALPGILA-LFLGAWSDRTGNR 715
+ + L ALP I + L LGAWSDR G +
Sbjct: 63 TSTSNWMRYQ-ALALALPSIASSLVLGAWSDRVGRK 97
>SB_51838| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 358
Score = 33.1 bits (72), Expect = 0.60
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 353 ELKKSDSILSINIKEFVKDLWAFRTKITVEPFVICYVLPSVLAGLAVQNLCLEKA 517
E K ++INI V D F K+ ++PF+ C+ LP A L +C EK+
Sbjct: 287 EWKAPSEEIAINIAIRVTDAILF-LKVLLDPFIYCWRLPKYRAALRNTLMCREKS 340
>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 33.1 bits (72), Expect = 0.60
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Frame = +2
Query: 431 ITVEPFVICYVLPSVLAGLAVQNLCLEKACLVNLEYDNKTCKHIMEGRTENYIEEEKHTQ 610
+TVE + Y+ +L +Q E+A L+ +N + I N + +
Sbjct: 18 VTVEITIFFYIAGMILELPVLQQYLYERAAK-ELKINNTSNTTICSPNDLNSTGQSANDA 76
Query: 611 IMV-AQMTSWSFPLQTALPGIL-ALFLGAWSDRTGNRKPL 724
+ A ++ L LP +L A LG WSD+ G RKPL
Sbjct: 77 VQEKASQYILAYNLALQLPAVLTACLLGTWSDKNG-RKPL 115
>SB_43628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 280
Score = 30.3 bits (65), Expect = 4.2
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = -1
Query: 230 LKTSKQIFIIFTV*FLFRYAVILVCNAINVVSGGWSVSRST 108
+K ++ +F++ V F+F ++ IL+ + ++ G WS++R T
Sbjct: 232 IKITRTLFVV-VVCFMFCWSPILIIDLVDTFRGFWSMNRET 271
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 29.9 bits (64), Expect = 5.5
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +2
Query: 338 KQYSSELKKSDSILSINIKEFVKDLWA---FRTKIT--VEPFVICYVLPSVLAGLAVQNL 502
K + + L KS + N ++ + DL F T I+ V P IC+ PS + QN+
Sbjct: 487 KVFFNSLPKSLNASEYNTRDLLTDLLQPKYFHTSISSSVLPSFICF--PSYMIPAFGQNI 544
Query: 503 CLEKACL 523
CL+ +CL
Sbjct: 545 CLKGSCL 551
>SB_51095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 29.5 bits (63), Expect = 7.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 695 STHRETVPRFPATRFAVENSNWSSGQPLSAYVSPPRCNS 579
STH P F A F V +++ S G PL PPR +S
Sbjct: 36 STHVHLEPAFLAEGFRVASNSCSPGDPLVLERPPPRWSS 74
>SB_32120| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-32)
Length = 459
Score = 29.5 bits (63), Expect = 7.3
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = -1
Query: 230 LKTSKQIFIIFTV*FLFRYAVILVCNAINVVSGGWSVSR 114
+K ++ +F++ V F+F +A ++ + ++V G WS+SR
Sbjct: 411 IKITRTLFVV-VVFFMFCWAPYMIVDLVDVFRGYWSMSR 448
>SB_22963| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 403
Score = 29.5 bits (63), Expect = 7.3
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = -1
Query: 230 LKTSKQIFIIFTV*FLFRYAVILVCNAINVVSGGWSVSR 114
+K ++ +F++ V F+F +A ++ + ++V G WS+SR
Sbjct: 292 IKITRTLFVV-VVFFMFCWAPYMIVDLVDVFRGYWSMSR 329
>SB_4263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1586
Score = 29.1 bits (62), Expect = 9.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 586 HRGGETYADNGCPDDQLEFSTANRVAGNLGTVSRCVERSDG 708
H D+G + + STA R+ N+ T S+ V ++DG
Sbjct: 367 HHTVRVTVDSGATGNMIRLSTATRLGCNITTSSQSVSQADG 407
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,963,727
Number of Sequences: 59808
Number of extensions: 634913
Number of successful extensions: 2550
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2547
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4894653009
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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