Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G09_e551_13.seq
         (1508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containi...    30   4.6  
At1g19620.1 68414.m02445 expressed protein                             30   4.6  
At5g47660.1 68418.m05884 DNA-binding protein-related similar to ...    29   6.0  
At2g18520.1 68415.m02158 pentatricopeptide (PPR) repeat-containi...    29   6.0  

>At4g34830.1 68417.m04942 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 749

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -1

Query: 710 FPSDRST--HR--ETVPRFPATRFAVENSNWSSGQPLSAY 603
           FPSD     H+  E++P+FPA  F + NSN  S +   AY
Sbjct: 368 FPSDGKHVGHQIDESMPQFPARNFELHNSNGRSPETSDAY 407


>At1g19620.1 68414.m02445 expressed protein
          Length = 317

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 794 FKKYTVLIIPPIAEVNFPSIGII-IKVFGFPSDRSTHRETVPRFPATRFAVENSNWSSGQ 618
           + +Y   + PP     F S  +   +  G+ ++ ST+RE VP F A + AVE S++S  Q
Sbjct: 58  YDQYVAAVPPPSTVTPFDSYNMSKFEDVGYYNN-STYRENVPAFQAVK-AVEESSYSYDQ 115


>At5g47660.1 68418.m05884 DNA-binding protein-related similar to
           GTL1 [Arabidopsis thaliana] GI:2664198
          Length = 398

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +1

Query: 580 ELHRGGETYADNGCPDDQLEFSTANRVAGNLGTVSRCVERSDGKPKTFMMMPILGK 747
           +L RG     D+  P  Q+EF   NR++ +  ++S  V+ SD      +   + GK
Sbjct: 114 QLTRGFSKEEDDSLPPLQMEFQARNRISWDGLSLSSSVDSSDSDSSPDVRKTVTGK 169


>At2g18520.1 68415.m02158 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 418

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 482 GLAVQNLCL-EKACLVNLEYDNKTCKHIMEGRTENYIEEEKHTQIMVAQMTSWSFP 646
           GL  Q L + +K+ +V+   D KTCKH+ EG  +N   E+      VA++    FP
Sbjct: 323 GLYDQGLTVFKKSAIVHKIPDFKTCKHLTEGLVKNNRMEDARG---VARIVKKKFP 375


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,466,417
Number of Sequences: 28952
Number of extensions: 439435
Number of successful extensions: 1102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4028931456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)