Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_G08_e543_14.seq
(1561 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 321 3e-86
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 161 3e-38
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 138 5e-31
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 130 1e-28
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 116 1e-24
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 116 2e-24
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 112 2e-23
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 111 5e-23
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 109 1e-22
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 101 5e-20
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 99 2e-19
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 99 3e-19
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 97 1e-18
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 97 1e-18
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 95 6e-18
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 93 1e-17
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 91 7e-17
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 87 2e-15
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 84 1e-14
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 80 2e-13
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 72 5e-11
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 71 6e-11
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 2e-07
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 57 1e-06
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 8e-06
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 50 2e-04
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 48 5e-04
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 48 7e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 0.001
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 47 0.001
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 47 0.001
UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1; ... 47 0.002
UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular organ... 47 0.002
UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: L... 47 0.002
UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep: Bet... 47 0.002
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 0.002
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 46 0.002
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 46 0.004
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 45 0.006
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 45 0.006
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 45 0.006
UniRef50_Q669R9 Cluster: Beta-galactosidase; n=14; Yersinia|Rep:... 43 0.019
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 43 0.019
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 42 0.033
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 42 0.033
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 42 0.033
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.033
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 42 0.058
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 42 0.058
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 42 0.058
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 41 0.077
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 41 0.10
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 41 0.10
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 40 0.13
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 40 0.13
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 40 0.13
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.18
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 40 0.18
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 40 0.18
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.18
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 40 0.18
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 40 0.23
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 40 0.23
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 39 0.41
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.41
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.54
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.72
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.72
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 38 0.72
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.72
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 38 0.95
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 37 1.3
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 37 1.3
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 37 1.3
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 37 1.3
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 36 2.2
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 36 2.2
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 2.2
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 36 2.9
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 3.8
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 35 5.0
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 6.7
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 6.7
UniRef50_Q6MYA2 Cluster: Zinc finger protein, putative; n=2; Asp... 35 6.7
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 34 8.8
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 321 bits (789), Expect = 3e-86
Identities = 155/187 (82%), Positives = 168/187 (89%), Gaps = 1/187 (0%)
Frame = +3
Query: 150 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 329
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 330 PKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 509
P+RLFEGNA DE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 68 PRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHAR 127
Query: 510 ILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGG-GA 686
+LIRQRHIRVRKQVVNIPSFIVRLDS KHIDFSL+SP+GGGRPGRVKRKN +KGQGG GA
Sbjct: 128 VLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGA 187
Query: 687 TNDEEED 707
+DEEED
Sbjct: 188 GDDEEED 194
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 161 bits (392), Expect = 3e-38
Identities = 83/174 (47%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = +3
Query: 156 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 335
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 336 RLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 515
RL EG A Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+L
Sbjct: 69 RLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVL 128
Query: 516 IRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGR-PGRVKRKNLRKGQ 674
IR + I+V KQVV++PSF+VR++S I + +P GR KRKN G+
Sbjct: 129 IRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKNNHAGK 182
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 138 bits (333), Expect = 5e-31
Identities = 83/160 (51%), Positives = 100/160 (62%), Gaps = 8/160 (5%)
Frame = +3
Query: 252 EVWRVKYTLARIRKAARELLTL-EEKDPKRLFEGNAXXXXXXXXXXXDEKQMK------L 410
EVWRVK+TL +IRKA ELL L EKDP+ LFE N E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFT 100
Query: 411 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 590
+ GL+I F E++LQTQVF+ L KSI HA +L+ HIR+ KQVV+I F V LDS
Sbjct: 101 SWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSR 159
Query: 591 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGG-GATNDEEED 707
KH DF GGG PG VKRKN++KG+GG GA +DEEED
Sbjct: 160 KHTDFFRHCLNGGGYPGSVKRKNVKKGRGGAGAGDDEEED 199
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 130 bits (314), Expect = 1e-28
Identities = 68/127 (53%), Positives = 83/127 (65%)
Frame = +3
Query: 153 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 332
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 333 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 512
+R+FEG A E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 513 LIRQRHI 533
LIRQ HI
Sbjct: 119 LIRQHHI 125
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 116 bits (280), Expect = 1e-24
Identities = 59/155 (38%), Positives = 93/155 (60%)
Frame = +3
Query: 153 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 332
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 333 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 512
K + + L+ ++ + + L RRLQT V + L+K+IH ARI
Sbjct: 70 KIPSQSYGILWFCYKYNFMNNMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARI 129
Query: 513 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 617
LI +HI+V+ Q+VN PSF+VR D+ I FSL S
Sbjct: 130 LIMHKHIQVKNQIVNKPSFLVRKDNEIFISFSLNS 164
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 116 bits (278), Expect = 2e-24
Identities = 65/162 (40%), Positives = 92/162 (56%), Gaps = 2/162 (1%)
Frame = +3
Query: 144 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-E 320
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMS 63
Query: 321 EKDPKRLFEG-NAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 497
+ +FE + +D VL LK+ LERRLQT V++ GLA+S
Sbjct: 64 SATNQTVFEAKKSELISHMQRAGLLGPDADIDNVLALKVPAQLERRLQTLVYRKGLARSP 123
Query: 498 HHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPF 623
AR L+ HI + + V +P ++V I ++ KSPF
Sbjct: 124 KQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 112 bits (270), Expect = 2e-23
Identities = 65/164 (39%), Positives = 97/164 (59%), Gaps = 7/164 (4%)
Frame = +3
Query: 156 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP- 332
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLTSTNPEDI 66
Query: 333 ----KRLFEGNAXXXXXXXXXXXDEKQMK--LDYVLGLKIEDFLERRLQTQVFKAGLAKS 494
+ L D++++ L+ VL L I +LERRLQ +VF AGLAKS
Sbjct: 67 PINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKS 126
Query: 495 IHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 626
+HHAR+LI R I ++ Q+V++P F+VR D I+++ S +G
Sbjct: 127 VHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 111 bits (267), Expect = 5e-23
Identities = 61/161 (37%), Positives = 88/161 (54%), Gaps = 2/161 (1%)
Frame = +3
Query: 144 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 323
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQS 63
Query: 324 --KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 497
+ R+ + +D VL LK+E L+RRLQTQV++ G A+S
Sbjct: 64 TGSEQARVERKKDELIGSLQRSGMLSENADIDDVLALKVEQQLDRRLQTQVYRRGFARSP 123
Query: 498 HHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 620
AR I HI + + V IP + V + I ++ SP
Sbjct: 124 KQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 109 bits (263), Expect = 1e-22
Identities = 63/167 (37%), Positives = 91/167 (54%), Gaps = 1/167 (0%)
Frame = +3
Query: 153 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 332
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++ ++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTE 65
Query: 333 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 512
+ E + LD VL L +ED LERRLQT VF+ GLA++ AR
Sbjct: 66 QGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQ 125
Query: 513 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG-GGRPGRVK 650
LI HI V +VV PS++V ++ I ++ SPF P R K
Sbjct: 126 LIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 101 bits (242), Expect = 5e-20
Identities = 58/167 (34%), Positives = 98/167 (58%)
Frame = -3
Query: 644 ATGPAAAERRLQREVNVLAGVQADDERGNVHHLLADTNMPLSDQDAGMMD*LRKTSLEHL 465
+T + E R EVNVL Q+D ER +V LL ++N+ L DQD+ +++ L +T L L
Sbjct: 21 STWSSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDL 80
Query: 464 SLKTALQEVLNLQTEHIIQFHLFLIKHSDPNQTT**SIAFKQSLRILLLECQQFTGSLTD 285
L+++ QE+ NLQ++ IIQ L + ++ +Q++ SI F+QSL +L + QQ +G +D
Sbjct: 81 GLQSSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSGQQISGGSSD 140
Query: 284 ASERVLDAPHFTLVAETILSDDLQLLIKTRLLERTSRSYVCFGKYRW 144
+ ++ +F+LV +T+ + LQ ++T R+ S V G W
Sbjct: 141 LRQLERNSVNFSLVLQTVFTSQLQFGVQTSGFVRSLWSRVSLGVSSW 187
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 99 bits (238), Expect = 2e-19
Identities = 63/160 (39%), Positives = 81/160 (50%), Gaps = 1/160 (0%)
Frame = +3
Query: 144 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL-LTLE 320
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLR 63
Query: 321 EKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 500
D + +K LD VL L +E+ L+RRLQT VFK LA S
Sbjct: 64 ASDANAQKQLERMIKRLSRYKILSDK-ATLDDVLSLTVENILDRRLQTIVFKKNLALSEK 122
Query: 501 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 620
AR LI HI V + V +P +V I + SP
Sbjct: 123 QARQLITHGHITVNGRRVTVPGMLVEAQYEDTIAYYENSP 162
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 99.1 bits (236), Expect = 3e-19
Identities = 60/175 (34%), Positives = 90/175 (51%)
Frame = +3
Query: 144 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 323
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPP 63
Query: 324 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 503
+ R ++ LD +LGL E++LERRLQT V+K GLA++I+
Sbjct: 64 AE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQ 121
Query: 504 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 668
AR LI HI + + V P +IV IDF SPF P + +N+++
Sbjct: 122 ARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENVQQ 176
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 97.1 bits (231), Expect = 1e-18
Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Frame = +3
Query: 144 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT-LE 320
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL +
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVA 63
Query: 321 EKDPKRLFEGN-----AXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 485
+ EG+ + +D +L LK E+ LERRLQTQV + GL
Sbjct: 64 SGGQEGELEGHYATQSEEILSKLIRYGIIKADANVDDILSLKTENILERRLQTQVLRLGL 123
Query: 486 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 620
A+++ AR I HI + + IP +V + HI + SP
Sbjct: 124 ARTVIQARQFITHGHIAINGRKATIPGMLVSKEDEMHIGYYGSSP 168
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 96.7 bits (230), Expect = 1e-18
Identities = 55/136 (40%), Positives = 79/136 (58%), Gaps = 2/136 (1%)
Frame = +3
Query: 174 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKRLFE 347
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM-- 73
Query: 348 GNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 527
++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI
Sbjct: 74 --PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHG 131
Query: 528 HIRVRKQVVNIPSFIV 575
H+ V + V P F+V
Sbjct: 132 HVAVAGRRVTSPGFLV 147
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 94.7 bits (225), Expect = 6e-18
Identities = 56/159 (35%), Positives = 82/159 (51%)
Frame = +3
Query: 144 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 323
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTS 63
Query: 324 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 503
++ E ++ LD VL L +E LERRLQT VF+ GLA +
Sbjct: 64 AQGEK--EAVQLFGILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQ 121
Query: 504 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 620
AR I HI V + +N PS++V L I + SP
Sbjct: 122 ARQFIVHGHIAVNGKKINAPSYLVPLVEEDAISYMPNSP 160
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 93.5 bits (222), Expect = 1e-17
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Frame = +3
Query: 144 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 323
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL +
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMS 63
Query: 324 ----KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAK 491
+ ++ KL+ VL LK++D +ERRLQT +++ G A
Sbjct: 64 AGNLPEDSHYIRDAQNIVKKLQTLGILKEDAKLEDVLALKVDDIMERRLQTIIYRKGFAN 123
Query: 492 SIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 620
SI AR I HI + + + +P ++V + + + SP
Sbjct: 124 SIKQARQFIVHGHISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 91.1 bits (216), Expect = 7e-17
Identities = 53/149 (35%), Positives = 82/149 (55%)
Frame = +3
Query: 174 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGN 353
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++ + + E
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEK 69
Query: 354 AXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 533
+ +LD VL L ++D LERRLQT + + GLAK++ AR I HI
Sbjct: 70 ERFLTKLKKLGVLSENAELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHI 129
Query: 534 RVRKQVVNIPSFIVRLDSGKHIDFSLKSP 620
V +VV+ PS++V+ + I+F SP
Sbjct: 130 MVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 86.6 bits (205), Expect = 2e-15
Identities = 47/149 (31%), Positives = 76/149 (51%)
Frame = +3
Query: 159 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 338
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L + D
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGM---DIDE 65
Query: 339 LFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 518
+ KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ +
Sbjct: 66 RADKEKELLDHLVRAGFISPNAKLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFV 125
Query: 519 RQRHIRVRKQVVNIPSFIVRLDSGKHIDF 605
HI + + +N P +V ++IDF
Sbjct: 126 VHGHITLNGKKINAPGHLVEKADEENIDF 154
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 83.8 bits (198), Expect = 1e-14
Identities = 50/155 (32%), Positives = 76/155 (49%)
Frame = +3
Query: 141 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 320
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL--- 59
Query: 321 EKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 500
G E++ +LD VL L++ D LERRLQT V++ GLA ++
Sbjct: 60 --GQTGTVSGEEFVARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMG 116
Query: 501 HARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 605
AR + H+ V V PS+ V + + F
Sbjct: 117 QARQFVSHGHVTVDGSRVTEPSYTVPVSEENTLAF 151
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 79.8 bits (188), Expect = 2e-13
Identities = 52/160 (32%), Positives = 78/160 (48%)
Frame = +3
Query: 144 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 323
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 324 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 503
+ +R K LD VL L++ D L RRLQT V K + +
Sbjct: 64 EVRER---KEPVLLRSLARIGLVGKDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQ 120
Query: 504 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPF 623
AR + HI + +VV IPS+ V ++ I + S F
Sbjct: 121 ARQAVVHGHITISDRVVTIPSYTVYVEEEGDIKLTGGSAF 160
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 71.7 bits (168), Expect = 5e-11
Identities = 36/57 (63%), Positives = 42/57 (73%)
Frame = +3
Query: 537 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 707
V +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN +K GGG +EEE+
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN-QKASGGGGDGEEEEE 82
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 71.3 bits (167), Expect = 6e-11
Identities = 47/139 (33%), Positives = 70/139 (50%)
Frame = +3
Query: 159 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 338
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLSGSSSH--- 65
Query: 339 LFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 518
+ + E L+ VL + FLERRLQT VFK GLA++I AR LI
Sbjct: 66 --DTSDKIIARMVKFGILENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLI 123
Query: 519 RQRHIRVRKQVVNIPSFIV 575
I V + V+IP ++V
Sbjct: 124 THGFIAVNMKRVSIPGYMV 142
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 2e-07
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +3
Query: 255 VWRVKYTLARIRKAARELLTLEEKDPKRLF 344
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 56.8 bits (131), Expect = 1e-06
Identities = 37/80 (46%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Frame = +3
Query: 561 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGATNDEEED*T-NKLIN 728
PSF+VR+DS K D SL SP GGGRPGRVK+K+L+ K GGA E T K
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLKVAAKEAAGGADGARLERWTVRKFXA 83
Query: 729 FXXXXXXLEGGARYPIRPIV 788
LE G + RP V
Sbjct: 84 LGLAHVGLELGLKLXPRPKV 103
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 8e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +3
Query: 390 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 497
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 50.0 bits (114), Expect = 2e-04
Identities = 25/61 (40%), Positives = 40/61 (65%)
Frame = -3
Query: 356 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETILSDDLQLLIKTRLLERTS 177
S+ + +LR+LL++ +Q + + + L AP +LVA+ L+DDLQL ++ LLERTS
Sbjct: 136 SLTLEDALRVLLIKRKQHASGVAELVKGELHAPQLSLVAKAELTDDLQLGVEAILLERTS 195
Query: 176 R 174
R
Sbjct: 196 R 196
Score = 46.0 bits (104), Expect = 0.003
Identities = 26/52 (50%), Positives = 29/52 (55%)
Frame = -1
Query: 622 NGDFREKSMCLPESRRTMNEGMFTTCLRTRICLCLIKMRA*WIDFARPALNT 467
+G+ KSMC S RT G FT CL TRI IK RA D ARP+L T
Sbjct: 58 SGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKT 109
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 48.4 bits (110), Expect = 5e-04
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +3
Query: 423 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 602
G + LERRL VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEIT 142
Query: 603 FSLKS 617
+S
Sbjct: 143 IKPES 147
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 48.0 bits (109), Expect = 7e-04
Identities = 32/122 (26%), Positives = 54/122 (44%)
Frame = +3
Query: 210 ELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXX 389
EL+++ Y L+ + + R +R+ AR L L E+D R+ +A
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRV-RASAALLDKLYALGL 88
Query: 390 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 569
+ L+ + F RRL T + K +A+ + A + Q H+RV VV P+F
Sbjct: 89 VPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAF 148
Query: 570 IV 575
+V
Sbjct: 149 LV 150
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 0.001
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +3
Query: 153 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 311
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 47.2 bits (107), Expect = 0.001
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +3
Query: 420 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 578
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 47.2 bits (107), Expect = 0.001
Identities = 26/64 (40%), Positives = 39/64 (60%)
Frame = +3
Query: 390 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 569
+E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI SF
Sbjct: 69 EEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIASF 127
Query: 570 IVRL 581
V++
Sbjct: 128 RVKV 131
>UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1;
Erwinia amylovora|Rep: Putative uncharacterized protein
- Erwinia amylovora (Fire blight bacteria)
Length = 123
Score = 46.8 bits (106), Expect = 0.002
Identities = 22/36 (61%), Positives = 24/36 (66%)
Frame = +2
Query: 824 RRDWENPCRXPT*SPLXAHPPXASWRNSXKARPDSP 931
RRDWENP + L AHPP ASWRNS +AR D P
Sbjct: 74 RRDWENPGVTQL-NRLAAHPPFASWRNSEEARTDRP 108
>UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular
organisms|Rep: LacZ-alpha peptide - Escherichia coli
Length = 90
Score = 46.8 bits (106), Expect = 0.002
Identities = 22/36 (61%), Positives = 24/36 (66%)
Frame = +2
Query: 824 RRDWENPCRXPT*SPLXAHPPXASWRNSXKARPDSP 931
RRDWENP + L AHPP ASWRNS +AR D P
Sbjct: 28 RRDWENPGVTQL-NRLAAHPPFASWRNSEEARTDRP 62
>UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: LacZ
protein - Phage M13mp18
Length = 102
Score = 46.8 bits (106), Expect = 0.002
Identities = 22/36 (61%), Positives = 24/36 (66%)
Frame = +2
Query: 824 RRDWENPCRXPT*SPLXAHPPXASWRNSXKARPDSP 931
RRDWENP + L AHPP ASWRNS +AR D P
Sbjct: 32 RRDWENPGVTQL-NRLAAHPPFASWRNSEEARTDRP 66
>UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep:
Beta-galactosidase - Escherichia coli (strain K12)
Length = 1024
Score = 46.8 bits (106), Expect = 0.002
Identities = 22/36 (61%), Positives = 24/36 (66%)
Frame = +2
Query: 824 RRDWENPCRXPT*SPLXAHPPXASWRNSXKARPDSP 931
RRDWENP + L AHPP ASWRNS +AR D P
Sbjct: 14 RRDWENPGVTQL-NRLAAHPPFASWRNSEEARTDRP 48
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 46.4 bits (105), Expect = 0.002
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +3
Query: 417 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 569
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 46.4 bits (105), Expect = 0.002
Identities = 32/118 (27%), Positives = 50/118 (42%)
Frame = +3
Query: 222 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQ 401
I +YGLR++ E + + ++RK A L L+E DP R K
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVI--KN 89
Query: 402 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 575
KL + + F ERRL + + + S A + H+R+ +VV PS I+
Sbjct: 90 RKLVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVRLGSKVVYDPSTII 147
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 45.6 bits (103), Expect = 0.004
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +3
Query: 396 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 575
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 576 R 578
+
Sbjct: 152 K 152
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 44.8 bits (101), Expect = 0.006
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +3
Query: 396 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 575
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + VNIPS++V
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLV 112
Query: 576 R 578
+
Sbjct: 113 K 113
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 44.8 bits (101), Expect = 0.006
Identities = 27/72 (37%), Positives = 38/72 (52%)
Frame = +3
Query: 417 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 596
V G + LERRL VF+AG A S AR ++R +HI + + V+IPS+ ++ G
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY--QVSEGDV 145
Query: 597 IDFSLKSPFGGG 632
I KS G
Sbjct: 146 ISLREKSRANAG 157
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 44.8 bits (101), Expect = 0.006
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = +3
Query: 417 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 596
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 597 IDFSLKS 617
I+F KS
Sbjct: 140 IEFRQKS 146
>UniRef50_Q669R9 Cluster: Beta-galactosidase; n=14; Yersinia|Rep:
Beta-galactosidase - Yersinia pseudotuberculosis
Length = 1066
Score = 43.2 bits (97), Expect = 0.019
Identities = 20/43 (46%), Positives = 24/43 (55%)
Frame = +2
Query: 809 PSFYNRRDWENPCRXPT*SPLXAHPPXASWRNSXKARPDSPFP 937
P +RRDWENP + L AHPP SWR+ A+ D P P
Sbjct: 16 PQILSRRDWENP-QITQYHRLEAHPPFHSWRDVESAQKDRPSP 57
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 43.2 bits (97), Expect = 0.019
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = +3
Query: 423 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 602
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V + G I+
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIE 146
Query: 603 FSLKS 617
KS
Sbjct: 147 IKEKS 151
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 42.3 bits (95), Expect = 0.033
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Frame = +3
Query: 210 ELKIIGEYGLRNKREVWRVKYTLAR-IRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 386
E+KI+ Y ++ KRE + L+R IR+ ++ ++ K P R E +
Sbjct: 29 EMKIMRRYNVQ-KREDYTTYNKLSRNIRELTNKIAEVDAKHPFRT-EMSGLLLEKLYVLG 86
Query: 387 XDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 566
+ L+ + F RRL + + +++++ HA +I H+RV VV P+
Sbjct: 87 LIPTKWDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVKDPA 146
Query: 567 FIV 575
F+V
Sbjct: 147 FLV 149
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 42.3 bits (95), Expect = 0.033
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +3
Query: 444 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 617
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKS 141
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 42.3 bits (95), Expect = 0.033
Identities = 43/137 (31%), Positives = 63/137 (45%)
Frame = +3
Query: 171 TPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEG 350
TPR ++ RL EL +G+ G +R ++ L R RK + L LEEK R G
Sbjct: 7 TPRFKRQR-RLLTELPGMGKAGALERRPYPPGQHGLQR-RKYSEFALQLEEKQKLRFHYG 64
Query: 351 NAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRH 530
+K ++V L + LE+RL VF+ G A SI AR L+
Sbjct: 65 -LREEQFRRLINKAKKSKATNWVEALV--NLLEKRLDNVVFRLGFASSIPAARQLVSHGK 121
Query: 531 IRVRKQVVNIPSFIVRL 581
+ V + VNI S I+++
Sbjct: 122 VLVNGKKVNIGSQIIKV 138
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.033
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +3
Query: 393 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 569
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 41.5 bits (93), Expect = 0.058
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +3
Query: 393 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 572
++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYS 136
Query: 573 VR 578
VR
Sbjct: 137 VR 138
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 41.5 bits (93), Expect = 0.058
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +3
Query: 423 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 569
G + LE RL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 41.5 bits (93), Expect = 0.058
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +3
Query: 522 QRHIRVRKQVVNIPSFI-----VRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGA 686
+R R R+ + IP + VR++ K IDFS GGGRPGRVKRK L+ A
Sbjct: 130 ERRYRGRRAFLVIPRVMGAPLSVRVEPQKLIDFSNTCLLGGGRPGRVKRKGLKVAAKKVA 189
Query: 687 TNDEE 701
D++
Sbjct: 190 GEDDD 194
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 41.1 bits (92), Expect = 0.077
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +3
Query: 393 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 572
EK + G + LERRL V++ G A + AR L+ HI V + NIPS+
Sbjct: 75 EKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYT 134
Query: 573 VRL 581
VR+
Sbjct: 135 VRV 137
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 40.7 bits (91), Expect = 0.10
Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Frame = +3
Query: 207 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL-FEGNAXXXXXXXXX 383
+E KI+ Y +++ E + + RI K EL L E D R+ N
Sbjct: 27 RETKILRRYYIQDPEEYHKYNKLVGRITKLVSELRKLPEDDSFRIKMTDNLMEKLYVFKM 86
Query: 384 XX---DEKQMKLDYVLG-------LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 533
QM L V G L F RRL T + + + + A I Q HI
Sbjct: 87 MYIALSRYQMGLISVRGNLELCERLSASVFCRRRLATVLVQRKFCEHLKQAVTYIEQGHI 146
Query: 534 RVRKQVVNIPSFIVRLDSGKHIDFS 608
RV VVNIP++ V + HI ++
Sbjct: 147 RVGLDVVNIPAYHVTRELEDHITWA 171
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 40.7 bits (91), Expect = 0.10
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = +3
Query: 423 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 602
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEIS 141
Query: 603 FSLKS 617
KS
Sbjct: 142 LRDKS 146
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 40.3 bits (90), Expect = 0.13
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +3
Query: 417 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 578
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 40.3 bits (90), Expect = 0.13
Identities = 29/118 (24%), Positives = 49/118 (41%)
Frame = +3
Query: 222 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQ 401
+ +YG+ ++RE+ + T+ +IR L L + + R+ D Q
Sbjct: 32 MNKYGVYDRRELITYRQTMRKIRHMVELLTQLPQDNNVRIELTRRLSRILYDMGVVDNAQ 91
Query: 402 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 575
LD + L L RRL + K + + I ++Q H+RV VV P+ V
Sbjct: 92 ASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRFVKQGHVRVGPNVVVNPALHV 149
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 40.3 bits (90), Expect = 0.13
Identities = 31/97 (31%), Positives = 43/97 (44%)
Frame = +3
Query: 279 ARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRL 458
A +K + + LEEK RL G + K + GL + LE RL
Sbjct: 39 AERKKKSEYAIRLEEKQKVRLNYGVSERQMLRYM----RKARRSKGSTGLALLQMLEMRL 94
Query: 459 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 569
VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 95 DCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 39.9 bits (89), Expect = 0.18
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +3
Query: 396 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 575
K K++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V
Sbjct: 70 KARKMNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRV 129
Query: 576 R 578
+
Sbjct: 130 K 130
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 39.9 bits (89), Expect = 0.18
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +3
Query: 423 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 569
G + LE RL +F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 39.9 bits (89), Expect = 0.18
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +3
Query: 405 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 572
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.18
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 438 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 581
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 39.9 bits (89), Expect = 0.18
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +3
Query: 423 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 602
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 603 F 605
F
Sbjct: 147 F 147
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 39.5 bits (88), Expect = 0.23
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +3
Query: 444 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 569
LE RL +F G+A +I AR L+ RHI V +V+IPS+
Sbjct: 54 LEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSY 95
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 39.5 bits (88), Expect = 0.23
Identities = 26/123 (21%), Positives = 51/123 (41%)
Frame = +3
Query: 207 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 386
++ +++ Y ++N+ + + IR+ A +L L DP R
Sbjct: 28 RDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGV 87
Query: 387 XDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 566
K D + + RRL + + +A++I A I Q H+RV ++N P+
Sbjct: 88 LTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPA 147
Query: 567 FIV 575
++V
Sbjct: 148 YLV 150
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 38.7 bits (86), Expect = 0.41
Identities = 23/96 (23%), Positives = 50/96 (52%)
Frame = +3
Query: 444 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPF 623
LE+R+ + ++G +S++ AR +I +H+ V ++ ++P +++ + G I F
Sbjct: 144 LEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMINV--GDIISF------ 195
Query: 624 GGGRPGRVKRKNLRKGQGGGATNDEEED*TNKLINF 731
+ G +KRK L++ + G + + TN+ F
Sbjct: 196 ---KEGSMKRKLLKRLKKGLISKKSRKRWTNRNFKF 228
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 38.7 bits (86), Expect = 0.41
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 423 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 569
G + LE RL +F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 38.3 bits (85), Expect = 0.54
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 579 LDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 686
+DS KH DFSL SP G R +VKRK L+ K GGA
Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLKVAAKKAAGGA 39
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.72
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +3
Query: 444 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 578
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.9 bits (84), Expect = 0.72
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +3
Query: 393 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 572
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 573 V 575
V
Sbjct: 136 V 136
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 37.9 bits (84), Expect = 0.72
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = +3
Query: 393 EKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 557
E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +V
Sbjct: 61 ENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSILVK 120
Query: 558 IPSFIV 575
PSFI+
Sbjct: 121 KPSFIL 126
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.72
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 423 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 569
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 37.5 bits (83), Expect = 0.95
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +3
Query: 405 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 584
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISLG 141
Query: 585 S 587
S
Sbjct: 142 S 142
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 37.1 bits (82), Expect = 1.3
Identities = 25/123 (20%), Positives = 53/123 (43%)
Frame = +3
Query: 207 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 386
++++ IG +GL+ K E +A+ + +E+ L ++DP + +
Sbjct: 29 KDVENIGRFGLKGKEEYAEYTKLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGV 88
Query: 387 XDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 566
D KQ ++ + F RR + K A+ + A L+ H+R+ + + P+
Sbjct: 89 IDLKQP--SELVKVNASSFCRRRAVVMLVKKKFAEHLTQAFGLLSHGHVRIGPETIQDPA 146
Query: 567 FIV 575
I+
Sbjct: 147 LII 149
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 37.1 bits (82), Expect = 1.3
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Frame = +3
Query: 246 KREVWRVKYTLA-RIRKAARELLTLEEKDPKR--LFEGNAXXXXXXXXXXXDEKQMKLDY 416
KRE + + TLA + R+ A + L E DP R E + ++
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGK 99
Query: 417 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 596
V G F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S
Sbjct: 100 VTGAS---FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDM 156
Query: 597 IDFSLKS 617
I ++ S
Sbjct: 157 ITWTKAS 163
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 37.1 bits (82), Expect = 1.3
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 444 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 578
LE RL V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.1 bits (82), Expect = 1.3
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +3
Query: 417 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 578
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 36.3 bits (80), Expect = 2.2
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 423 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 578
G + LERRL V++A ++ AR + H+ V + VNIPS+ V+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVK 136
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 36.3 bits (80), Expect = 2.2
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +3
Query: 444 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 575
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQV 133
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.3 bits (80), Expect = 2.2
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 444 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 569
LE RL VF+ +A +I AR LI HI + K+ V IPS+
Sbjct: 109 LEMRLDNIVFRLHMAPTIKAARQLISHGHILINKKKVTIPSY 150
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 35.9 bits (79), Expect = 2.9
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 423 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 569
G ++ LE RL V++ G A S AR +R H++V + V+IPS+
Sbjct: 89 GDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 35.5 bits (78), Expect = 3.8
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +3
Query: 423 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 569
GL + LE RL V++AG A ++ AR L+ H++V + V I S+
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 35.1 bits (77), Expect = 5.0
Identities = 27/95 (28%), Positives = 44/95 (46%)
Frame = +3
Query: 444 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPF 623
+E+RL ++++G K+I AR R I V +V IPS I L+SG I S K+
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDII--SYKNQL 255
Query: 624 GGGRPGRVKRKNLRKGQGGGATNDEEED*TNKLIN 728
+ +K + N+ + +NK+ N
Sbjct: 256 DSLKTAEIKNNLFSNINTNVSGNEVSNNVSNKVSN 290
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 6.7
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 423 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 569
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 34.7 bits (76), Expect = 6.7
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 426 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 605
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 606 S 608
+
Sbjct: 135 A 135
>UniRef50_Q6MYA2 Cluster: Zinc finger protein, putative; n=2;
Aspergillus fumigatus|Rep: Zinc finger protein, putative
- Aspergillus fumigatus (Sartorya fumigata)
Length = 1650
Score = 34.7 bits (76), Expect = 6.7
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -3
Query: 632 AAAERRLQREVNVLAGVQADDERGNVHHLLADTNMPLSD 516
A AER E +VLA V + R +V ++L+ TN+PL D
Sbjct: 519 AQAERLFALEASVLASVADSEARASVSNILSKTNLPLLD 557
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 34.3 bits (75), Expect = 8.8
Identities = 23/58 (39%), Positives = 30/58 (51%)
Frame = +3
Query: 444 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 617
LERRL V++A A +I AR L+ HIRV NI S R++ G I K+
Sbjct: 92 LERRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNIAS--RRVNPGDEISLGSKA 147
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,059,538,247
Number of Sequences: 1657284
Number of extensions: 19317385
Number of successful extensions: 46642
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 44269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46550
length of database: 575,637,011
effective HSP length: 104
effective length of database: 403,279,475
effective search space used: 167360982125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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