Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G08_e543_14.seq
         (1561 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   1.5  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    25   2.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   2.6  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 501 DGLTSQDQP*TPESEDGAPR 442
           DG + Q+QP +PES    PR
Sbjct: 413 DGGSGQNQPESPESSSSTPR 432


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 758 GGPVPNSPYSESFTXHWPSFYN 823
           G P+P   Y+E+ T  W S +N
Sbjct: 246 GDPIPYIQYTETETKTWGSVFN 267


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 15/47 (31%), Positives = 17/47 (36%)
 Frame = -3

Query: 863  IKLGNGRGFPSHDGCKTTASXL*TTHYRANWVPGPPLEXXXXXFKVY 723
            IK     G P     K T + L     R +WV  PPL       K Y
Sbjct: 1091 IKAYTAEGVPEQPPDKATCTTLTAQTIRVSWV-SPPLTAANGVIKGY 1136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,140
Number of Sequences: 336
Number of extensions: 4449
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 47013075
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)