Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G08_e543_14.seq
         (1561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   279   6e-76
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   279   1e-75
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    43   1e-04
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    29   2.3  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    27   7.0  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   9.3  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  279 bits (685), Expect = 6e-76
 Identities = 133/188 (70%), Positives = 150/188 (79%)
 Frame = +3

Query: 144 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 323
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 324 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 503
           KDPKRLFEGNA           DE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 504 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 683
           AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR  Q GG
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGG 184

Query: 684 ATNDEEED 707
              + EE+
Sbjct: 185 EGEEAEEE 192


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  279 bits (683), Expect = 1e-75
 Identities = 133/187 (71%), Positives = 149/187 (79%)
 Frame = +3

Query: 144 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 323
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 324 KDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 503
           KDPKRLFEGNA           DE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHH
Sbjct: 65  KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHH 124

Query: 504 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 683
           AR+LI QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR  +GG 
Sbjct: 125 ARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLRSQEGGE 184

Query: 684 ATNDEEE 704
               EEE
Sbjct: 185 GEEAEEE 191


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 27/123 (21%), Positives = 49/123 (39%)
 Frame = +3

Query: 207 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 386
           +++ ++  Y +  + E  +      + R+ A  L  L+  DP RL   N           
Sbjct: 28  RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87

Query: 387 XDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 566
              K    D      +     RRL   + K  +++ +  A  LI Q H+RV   V+  P+
Sbjct: 88  LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPA 147

Query: 567 FIV 575
           ++V
Sbjct: 148 YLV 150


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 356 SIAFKQSLRILLLECQQFTGSLTDASERVLDAPHFTLVAETIL 228
           SI F+ S RIL     Q T  LT  S     + HF ++  TIL
Sbjct: 18  SIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTIL 60


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = -3

Query: 458 KTALQEVLNLQTEHI-IQFHLFLIKHSDPNQTT**SIAFKQSLRILLLECQQFTGSLTDA 282
           KT++ E+ N    H+  +F   ++K  +  Q         QSL     E   FT SL   
Sbjct: 187 KTSILEICNEMYVHLRTRFECRVMKKKNRTQWINIDEHLSQSLHATDTETHTFTDSLVVL 246

Query: 281 SERVLDAPHFTLVAETILSDDLQLL 207
           +E V+D    T +++ +L  D + L
Sbjct: 247 NEVVIDRGPNTAMSDIMLYVDSKYL 271


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 402 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 533
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,149,960
Number of Sequences: 5004
Number of extensions: 72310
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 878103082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)