Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_G08_e543_14.seq
(1561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 258 9e-69
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 257 2e-68
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 252 6e-67
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 130 3e-30
07_03_1357 - 25982861-25983068,25983354-25983361 74 4e-13
07_03_1358 - 25984897-25984997,25985623-25985650 47 5e-05
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 32 1.1
12_02_0441 + 19115990-19116478 31 2.5
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 30 4.3
02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996 30 5.7
07_03_0366 + 17321948-17322331 29 7.5
02_05_1008 - 33461225-33462334 29 10.0
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 258 bits (632), Expect = 9e-69
Identities = 120/185 (64%), Positives = 146/185 (78%)
Frame = +3
Query: 153 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 332
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 333 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 512
+R+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 70 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 129
Query: 513 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATN 692
LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K GGG
Sbjct: 130 LIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGGGDG 189
Query: 693 DEEED 707
+EE++
Sbjct: 190 EEEDE 194
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 257 bits (629), Expect = 2e-68
Identities = 120/183 (65%), Positives = 145/183 (79%)
Frame = +3
Query: 159 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 338
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 339 LFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 518
+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LI
Sbjct: 95 IFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLI 154
Query: 519 RQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDE 698
RQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K GGG +E
Sbjct: 155 RQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGGGDGEE 214
Query: 699 EED 707
E++
Sbjct: 215 EDE 217
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 252 bits (617), Expect = 6e-67
Identities = 118/177 (66%), Positives = 141/177 (79%)
Frame = +3
Query: 153 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 332
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 333 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 512
+R+FEG A + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+
Sbjct: 286 RRIFEGEALLRRMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARV 345
Query: 513 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGG 683
LIRQRHIRV +Q+VNIPSF+VR++S KHIDFSL SPFGGG PGRVKRKN +K GGG
Sbjct: 346 LIRQRHIRVGRQIVNIPSFMVRVESEKHIDFSLTSPFGGGPPGRVKRKNQKKASGGG 402
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 130 bits (314), Expect = 3e-30
Identities = 68/127 (53%), Positives = 83/127 (65%)
Frame = +3
Query: 153 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 332
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNP 58
Query: 333 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 512
+R+FEG A E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +
Sbjct: 59 RRIFEGEALLRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHV 118
Query: 513 LIRQRHI 533
LIRQ HI
Sbjct: 119 LIRQHHI 125
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 73.7 bits (173), Expect = 4e-13
Identities = 37/58 (63%), Positives = 43/58 (74%)
Frame = +3
Query: 534 RVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 707
RV +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN +K GGG +EEE+
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN-QKASGGGGDGEEEEE 59
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 5e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 153 FSKTYVTPRRPFEKARLDQELKIIGEYG 236
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 32.3 bits (70), Expect = 1.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 450 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 575
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>12_02_0441 + 19115990-19116478
Length = 162
Score = 31.1 bits (67), Expect = 2.5
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +3
Query: 558 IPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 707
+ +F++RL K I K+ GGG GR K+ KG+GGG ++EEE+
Sbjct: 108 VKTFVIRLVE-KVIGLE-KNGRGGGGGGRKKK---GKGKGGGGEDEEEEE 152
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 30.3 bits (65), Expect = 4.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +3
Query: 624 GGGRPGRVKRKNLRKGQGGG 683
G RPG RKN +GQGGG
Sbjct: 1369 GSSRPGEWNRKNNNRGQGGG 1388
>02_02_0187 + 7611922-7614099,7614692-7614795,7614828-7614996
Length = 816
Score = 29.9 bits (64), Expect = 5.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 18 VGGRS*XLVXSPGLQXIRHEASVFFGEPRIETSSP 122
+G R P RH A VFFG R+E +P
Sbjct: 774 IGIRKFYFTMEPSFHSPRHRAGVFFGRSRVEYHAP 808
>07_03_0366 + 17321948-17322331
Length = 127
Score = 29.5 bits (63), Expect = 7.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +3
Query: 588 GKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDE 698
G ++ +S GGG R +R+ R+G GGGA E
Sbjct: 32 GDTVEAERQSRHGGGGRRRRQRRGRRRGSGGGAMEAE 68
>02_05_1008 - 33461225-33462334
Length = 369
Score = 29.1 bits (62), Expect = 10.0
Identities = 24/81 (29%), Positives = 44/81 (54%)
Frame = +3
Query: 393 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 572
E Q+ L+Y+ G +E RR+ ++ F A +A+ + + +RHI V + + PS +
Sbjct: 163 ELQILLEYMDGGSLEG---RRIASEAFLADVARQVLSGIAYLHRRHI-VHRDIK--PSNL 216
Query: 573 VRLDSGKHIDFSLKSPFGGGR 635
+ +DSG+ + + FG GR
Sbjct: 217 L-IDSGRRVKI---ADFGVGR 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,671,909
Number of Sequences: 37544
Number of extensions: 629387
Number of successful extensions: 1662
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1651
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5035314872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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