Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G08_e543_14.seq
         (1561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   296   3e-80
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    38   0.015
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    30   3.9  
U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile (un...    30   5.1  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  296 bits (726), Expect = 3e-80
 Identities = 140/187 (74%), Positives = 160/187 (85%)
 Frame = +3

Query: 138 RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 317
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 318 EEKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 497
           E+KDPKRLFEGNA           DE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSI
Sbjct: 63  EDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSI 122

Query: 498 HHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQG 677
           HHARILI+Q HIRVR+QVV++PSFIVRLDS KHIDFSL+SP+GGGRPGRVKR+ LRKG G
Sbjct: 123 HHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTLRKGDG 182

Query: 678 GGATNDE 698
            G  ++E
Sbjct: 183 AGGDDEE 189


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 38.3 bits (85), Expect = 0.015
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
 Frame = +3

Query: 246 KREVWRVKYTLA-RIRKAARELLTLEEKDPKR--LFEGNAXXXXXXXXXXXDEKQMKLDY 416
           KRE + +  TLA + R+ A  +  L E DP R    E               +   ++  
Sbjct: 40  KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGK 99

Query: 417 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 596
           V G     F  RRL   +   G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S   
Sbjct: 100 VTGAS---FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDM 156

Query: 597 IDFSLKS 617
           I ++  S
Sbjct: 157 ITWTKAS 163


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 30.3 bits (65), Expect = 3.9
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -2

Query: 585 SPGGR*TRECSPPACGHEYASV*SRCGHDGLTSQDQP*TPESEDGAPRSPQSSNRAHN 412
           SPGG   R+ +P   G +  S   R G DG   Q Q  +  + D +     SS R H+
Sbjct: 434 SPGGSAGRQAAP---GDDVGSSEDRSGQDGRRVQQQNASTPASDNSSSHDDSSERRHS 488


>U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein2 protein.
          Length = 548

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 482 SCEVNPSCPHLDQTEAYSCPQAGGEHS 562
           +CE+N  CP  D    ++CP  GG H+
Sbjct: 363 ACELN--CPKCDPKHTFTCPAVGGIHN 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,191,543
Number of Sequences: 27780
Number of extensions: 455179
Number of successful extensions: 1138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4504441732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)