Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G08_e543_14.seq
         (1561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   266   3e-71
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   264   8e-71
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    32   0.89 
At4g19870.2 68417.m02913 kelch repeat-containing F-box family pr...    31   2.1  
At4g19870.1 68417.m02912 kelch repeat-containing F-box family pr...    31   2.1  

>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  266 bits (652), Expect = 3e-71
 Identities = 129/197 (65%), Positives = 154/197 (78%), Gaps = 4/197 (2%)
 Frame = +3

Query: 126 MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 305
           MVN R    + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 306 LLTLEEKDPKRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGL 485
           LLTL+EK+P+R+FEG A           DE Q KLDYVL L +E+FLERRLQT VFK+G+
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 486 AKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR 665
           AKSIHHAR+LIRQRHIRV +Q+VNIPSF+VR++S KH+DFSL SPFGGGRPGRVKR+N R
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNER 180

Query: 666 ----KGQGGGATNDEEE 704
               K  GG    D+EE
Sbjct: 181 AGAKKASGGDGDEDDEE 197


>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  264 bits (648), Expect = 8e-71
 Identities = 127/189 (67%), Positives = 152/189 (80%), Gaps = 5/189 (2%)
 Frame = +3

Query: 153 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 332
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69

Query: 333 KRLFEGNAXXXXXXXXXXXDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 512
           +R+FEG A           DE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+
Sbjct: 70  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRV 129

Query: 513 LIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN----LRKGQGG 680
           LIRQRHIRV KQ+VNIPSF+VRLDS KHIDF+L SPFGGGRPGRVKR+N     +K  GG
Sbjct: 130 LIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKASGG 189

Query: 681 G-ATNDEEE 704
           G A  D+EE
Sbjct: 190 GDADGDDEE 198


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 32.3 bits (70), Expect = 0.89
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 426 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 575
           L +  F  RRL T +     A+    A   I Q H+RV  + +  P+F+V
Sbjct: 99  LSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPAFLV 148


>At4g19870.2 68417.m02913 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 444 RSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS*DPSPRVSTV 304
           +  + +  A +P  S S  +L   PD++VE+CL  IS    P +S V
Sbjct: 10  KKTKRTTNASSPTPSSSSPSLSSLPDEIVENCLARISRSYYPTLSIV 56


>At4g19870.1 68417.m02912 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 400

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 444 RSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS*DPSPRVSTV 304
           +  + +  A +P  S S  +L   PD++VE+CL  IS    P +S V
Sbjct: 10  KKTKRTTNASSPTPSSSSPSLSSLPDEIVENCLARISRSYYPTLSIV 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,241,571
Number of Sequences: 28952
Number of extensions: 435690
Number of successful extensions: 1050
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4192787520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)