Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_G07_e535_13.seq
(1522 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 153 6e-38
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.7
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 28 2.9
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 28 2.9
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 28 2.9
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 28 2.9
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 28 3.9
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 27 5.2
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 27 5.2
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 9.0
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 153 bits (371), Expect = 6e-38
Identities = 81/173 (46%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
Frame = +2
Query: 143 MIIYKDVITGDEMFSDTYKVKLIDEVIYEVTGKTV-IRTQDDIHIDGFNPSAEEADEGTD 319
M++YKDVI+GDE+ SD Y +K +D+++YE + V ++ D+ I G NPSAE+A+E +
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPSAEDAEENAE 59
Query: 320 SNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMNKV 499
ET ++V + RL T +F DKKSY Y+K YMK + A+L+E P++V +F+ N
Sbjct: 60 EGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGF 117
Query: 500 MKDILARFKDLQFFTGESMDCDGMVAMMEYRNINGTDVPFMMFFKHGLDEEKF 658
+K ILA FKD F+ GESMD D MV +M YR T P+M+FFK GL EKF
Sbjct: 118 VKKILANFKDYDFYIGESMDPDAMVVLMNYREDGIT--PYMIFFKDGLVSEKF 168
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 1.7
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = -2
Query: 381 NAYVSTSL*FRTM---STPVSTLESVPSSA---SSAEGLNPSMWISSCVLITVLPVTS*I 220
N STS+ + + STP++T S++ +S + + ISS +T PVT+
Sbjct: 531 NCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590
Query: 219 TSSINLTLYVSENISSPVITS 157
++ LY S I+SP TS
Sbjct: 591 CTTSTSVLYTSTPITSPNSTS 611
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +2
Query: 212 DEVIYEVTGKTVIRTQDDIHIDGFNPSAEE-----ADEGTDSNVET-GVDIVLNHRLVE 370
DE+ + + +D + + F EE A E ++ +T +D+VL+HRL+E
Sbjct: 145 DEIRFSSRNSKGVNYNEDAYFESFEEEEEEEMYEYATEVSEEPEDTRAIDVVLDHRLIE 203
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +2
Query: 95 SRSFGFIILNRLQSIKMIIYKDVITGDEMFSDTYKVKLIDEVIYEVTGKTVIR 253
SR+ + I +L +++YK + M DT++ ++ +YE++G +R
Sbjct: 118 SRNLLYSIAEKLGLSSIVVYKAELITSSMLLDTFQTMESNQEMYELSGTRKMR 170
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 28.3 bits (60), Expect = 2.9
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +2
Query: 200 VKLIDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYA 379
+KLID I + G D HI N A EA +++ +GV +V R + ++
Sbjct: 455 LKLIDFGIAKAIGNDTTNIHRDSHIGTINYMAPEALTDMNAHTNSGVKLVKLGRPSDVWS 514
Query: 380 FG 385
G
Sbjct: 515 LG 516
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 2.9
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 338 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKT 484
+D V ++L+E F ++K T+YLK + L K + PD V+ T
Sbjct: 89 IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.9 bits (59), Expect = 3.9
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = -2
Query: 372 VSTSL*FRTMSTPVSTLESVPSSASSAEGLNPSMWISSCVLITVLPVTS*ITSSINLTLY 193
+S+SL + STP T PS+ S L PS S+ +++ V S +TS I+ T
Sbjct: 566 ISSSLTATSTSTPALTHSITPSNTSYTSSLIPSS--STDYSSSLITVCSNVTSEISSTSL 623
Query: 192 VS 187
S
Sbjct: 624 AS 625
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -2
Query: 651 SSSRPCLKNIMNGTSVPLIFLYSIMATMPSQSMD 550
S+ + L+ ++NG S+P I ++ I MPS++ +
Sbjct: 34 SAMKTILRVVINGDSLPSILMHVIRFVMPSRNKE 67
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.5 bits (58), Expect = 5.2
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 262 VLCSDHGLAGDFINNFVDQLNFIRIREHLVTSYNILIDYHFDGLE 128
V+C D GL+G+F + IR + + Y LI Y FDG E
Sbjct: 288 VMCLDLGLSGEFCTAVA---HSIREQCQMYIKYLSLIGYLFDGSE 329
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 242 TVIRTQDDIHIDGFNPSAEEADEGTDSNVE 331
T+ ++DDIH D ++ A+ DE SNVE
Sbjct: 50 TIDDSEDDIHYDDYD--ADAVDEEMPSNVE 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,666,199
Number of Sequences: 5004
Number of extensions: 85678
Number of successful extensions: 225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 852334820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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