Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G07_e535_13.seq
         (1522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...   122   1e-27
03_06_0724 - 35757228-35757323,35757837-35757893,35757983-357580...    35   0.15 
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727...    30   5.5  
10_01_0108 + 1337009-1338190                                           29   9.7  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score =  122 bits (293), Expect = 1e-27
 Identities = 71/174 (40%), Positives = 103/174 (59%), Gaps = 3/174 (1%)
 Frame = +2

Query: 143 MIIYKDVITGDEMFSDTYKVKLIDE-VIYEVTGKTVIRTQDDIHIDGFNPSAEEA--DEG 313
           M++Y+D++TGDE+ SD++  + I+  +++EV GK V++   D+ I G NPSAE    DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59

Query: 314 TDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMN 493
            D      VDIV   RL E   F DKK +  ++K Y+K L AKL+ +  ++   FK N+ 
Sbjct: 60  VDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDAEKQEE---FKKNIE 115

Query: 494 KVMKDILARFKDLQFFTGESMDCDGMVAMMEYRNINGTDVPFMMFFKHGLDEEK 655
              K +L + KDLQFF GESM  DG +    Y+  +G   P  ++F HGL E K
Sbjct: 116 GATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHGLKEVK 167


>03_06_0724 -
           35757228-35757323,35757837-35757893,35757983-35758075,
           35758271-35758336,35758444-35758653,35758750-35759022,
           35759112-35759251,35759330-35759471
          Length = 358

 Score = 35.1 bits (77), Expect = 0.15
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
 Frame = +2

Query: 209 IDEVIYEVTGKTVIRTQDDIHIDGFNPSAEEADEGTDSNVETGVDIVLNHRLVETYAFGD 388
           +D ++ + T  TV++  DD   DG    A+ +  G + ++   + ++   R  E     D
Sbjct: 134 VDLILEQTTVGTVVKIADDEE-DGEGNGADGSSTGGNDDLFGLISVLNLGRYSEHRCMKD 192

Query: 389 KKSYTLYL---KDYMKKLVAKLEEKAPD 463
            K Y L +   KD  KKL   L +KAPD
Sbjct: 193 LKDYLLAVCGDKDTKKKLKQMLGDKAPD 220


>05_03_0001 -
           7269231-7269436,7269536-7270100,7270600-7270821,
           7270913-7271155,7271227-7271481,7272017-7272370,
           7273082-7273164,7273250-7273630,7273874-7274027
          Length = 820

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 294 AEGLNPSMWISSCVLITVLPVTS*ITSSINLTLYVSENISSPVI 163
           +EG+N S  +  CV++  LP  S     +  T+   ENIS PV+
Sbjct: 662 SEGINFSDGMGRCVVMVGLPYPSPSDVELTETIKYIENISKPVL 705


>10_01_0108 + 1337009-1338190
          Length = 393

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 137 IKMIIYKDVITGDEMFSDTYKVKLIDEVIYEVTGKTVIRTQDDI 268
           I +   + +    E ++D YK +L+D  I E+  K V++   +I
Sbjct: 131 IGLTFIRSIHLSSEAYNDAYKFRLLDSCIDEIGEKNVVQVVSNI 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,863,021
Number of Sequences: 37544
Number of extensions: 600265
Number of successful extensions: 1292
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4884487468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)