Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G07_e535_13.seq
         (1522 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...   118   1e-26
At3g05540.1 68416.m00607 translationally controlled tumor family...    97   4e-20
At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase fa...    30   3.5  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score =  118 bits (284), Expect = 1e-26
 Identities = 71/174 (40%), Positives = 100/174 (57%), Gaps = 3/174 (1%)
 Frame = +2

Query: 143 MIIYKDVITGDEMFSDTYKVKLIDE-VIYEVTGKTVIRTQDDIHIDGFNPSAEEA--DEG 313
           M++Y+D++TGDE+ SD++  K I+  +++EV GK V     D++I G NPSAEE   DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNI-GANPSAEEGGEDEG 59

Query: 314 TDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMN 493
            D + +  VDIV   RL E   + DKK +  Y+K Y+K L  KL E+  DQ  +FK  + 
Sbjct: 60  VDDSTQKVVDIVDTFRLQEQPTY-DKKGFIAYIKKYIKLLTPKLSEE--DQA-VFKKGIE 115

Query: 494 KVMKDILARFKDLQFFTGESMDCDGMVAMMEYRNINGTDVPFMMFFKHGLDEEK 655
              K +L R  D QFF GE M  D  +    Y+   G+  P  ++F HGL E K
Sbjct: 116 GATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYK--EGSTNPTFLYFAHGLKEVK 167


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 96.7 bits (230), Expect = 4e-20
 Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 3/174 (1%)
 Frame = +2

Query: 143 MIIYKDVITGDEMFSDTYKVKLIDE-VIYEVTGKTVIRTQDDIHIDGFNPSAEEA--DEG 313
           M++Y+D++TGDE+ SD++  K I+  +++EV GK              NPS EE   DEG
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGK--------------NPSGEEGGEDEG 46

Query: 314 TDSNVETGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMN 493
            D      VDI+   RL E  +F DKK + +++K Y+K+L  KL+    +  ++FK ++ 
Sbjct: 47  VDDQAVKVVDIIDTFRLQEQPSF-DKKQFVMFMKRYIKQLSPKLDS---ENQELFKKHIE 102

Query: 494 KVMKDILARFKDLQFFTGESMDCDGMVAMMEYRNINGTDVPFMMFFKHGLDEEK 655
              K ++++ KD QFF GESM+ +    +  Y     TD P  ++  +GL E K
Sbjct: 103 SATKFLMSKLKDFQFFVGESMEGEEGSLVFAYYREGATD-PTFLYLAYGLKEIK 155


>At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P95649 CbbY protein
           {Rhodobacter sphaeroides}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1055

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +2

Query: 383 GDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMNKVMKDILARFKDLQFFTGESMDC 562
           G  + +  Y+ D   K  A    + P ++D   T   +  +D+  +   L F+T   ++C
Sbjct: 375 GRVQQFVDYIADLESKQTATTVPEFPSKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINC 434

Query: 563 DGMVAMMEYRNINGTDVPFMMFFKHG--LDEEK 655
             ++  +E+      D+PF +   H    D EK
Sbjct: 435 MHVLPDLEFLEKKYKDMPFTVVGVHSAKFDNEK 467


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,230,752
Number of Sequences: 28952
Number of extensions: 468357
Number of successful extensions: 1072
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4067485824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)