Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G06_e527_14.seq
         (1554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    31   0.32 
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    28   4.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    23   4.4  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = -1

Query: 357 IITPWTSVVMLVSS*FGVNSMFMLTLLFLRSTHSLAS 247
           II+ W+S+++++SS  G + ++   LLFLR    ++S
Sbjct: 466 IISLWSSLMIIISSSLGSDEIYKACLLFLRKLEDVSS 502


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 552 CRAELINMCKILWIILRFYYTFLYMIFLFLVSVFRYTRNMSKTN 683
           C+   IN C+  W  +R YY +L ++      +F    N+SKT+
Sbjct: 420 CKTLDINSCRE-WFWIRIYYLYLKLMIFRPFLIFLAYVNISKTS 462


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 23.4 bits (48), Expect(2) = 4.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 470  LKSYPKVSVDVKWELKNENNVDIICILVPSRIN 568
            ++ +P+V VD    L   N +D+    +PSR N
Sbjct: 2398 IRIHPEVKVDSLTSLVTFNEIDLSKPKLPSRTN 2430



 Score = 22.2 bits (45), Expect(2) = 4.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 365  PIPFPLADRDACKDKGLTCPLQPNVLANYTATLPVLKS 478
            P P  +  R     + +   L P   ANY+   P+LKS
Sbjct: 2327 PDPESVDSRFLQGSRSMKYALNPGEEANYSWDFPILKS 2364


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,753,587
Number of Sequences: 5004
Number of extensions: 88075
Number of successful extensions: 228
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 874138734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)