Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G06_e527_14.seq
         (1554 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    33   0.61 
04_04_1377 - 33064906-33065607                                         31   1.9  
01_03_0055 + 12074512-12076155                                         29   7.5  
12_01_0403 - 3185897-3186931,3187200-3187311,3187425-3187735,318...    29   9.9  
06_03_0094 + 16573075-16573268,16574636-16574996                       29   9.9  
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...    29   9.9  

>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
            1171148-1171398,1171442-1171687,1172220-1172415,
            1172796-1172876,1172966-1173169,1173671-1173880,
            1173953-1174174,1174437-1174480,1174974-1175052,
            1175066-1175227,1175337-1175564,1175786-1175815,
            1175905-1176273,1176356-1176571,1177202-1177683,
            1177930-1177975
          Length = 1352

 Score = 33.1 bits (72), Expect = 0.61
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 283  RQHEHRIHSESRAHQHNHRRPRGDD 357
            R+   + HS SR+H+H+H R  GDD
Sbjct: 1225 RRSSKKDHSSSRSHRHHHHRSSGDD 1249


>04_04_1377 - 33064906-33065607
          Length = 233

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 229 GDRVQSRR*GVRAAKKQ*RQHEHRIHSESRAHQHNHRRPRGDDEHAH 369
           G RV + + G+  A       E + H     H H H +P G+++H H
Sbjct: 157 GSRVDALQTGMMVAPTT-HHRERQKHHHHHHHHHPHLQPHGEEQHHH 202


>01_03_0055 + 12074512-12076155
          Length = 547

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 295 HRIHSESRAHQHNHRRPRGDD 357
           HR+H     H  +H+R RGDD
Sbjct: 357 HRVHHHHHHHNGHHKRRRGDD 377


>12_01_0403 -
           3185897-3186931,3187200-3187311,3187425-3187735,
           3188112-3188324,3188834-3189052
          Length = 629

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 23/83 (27%), Positives = 34/83 (40%)
 Frame = +2

Query: 242 SQDAKECVLRRNSNVSMNIEFTPNQELTSITTDVHGVMMNMPIPFPLADRDACKDKGLTC 421
           S   K+  + R  +    + F    EL S TTD  G   N      L   D C ++ LT 
Sbjct: 386 SLSTKDAYIVREGDPVSEMLFVIRGELESSTTD--GGRTNFFSSITLRPGDFCGEELLTW 443

Query: 422 PLQPNVLANYTATLPVLKSYPKV 490
            L PN   N+  +   ++S  +V
Sbjct: 444 ALMPNPSLNFPQSTRTVRSVTEV 466


>06_03_0094 + 16573075-16573268,16574636-16574996
          Length = 184

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 341 VHGVMMNMPIPFPLADRDACKDKGLTCPLQPNV 439
           +HG ++++P P P A  DA   +  TCP  P V
Sbjct: 18  LHGCLVSLPPPPPPALEDARNHRHTTCPRLPPV 50


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +2

Query: 293 NIEFTPNQELTSITTDVHGVMMNMPIPFPLADRDACKDKGLTCPLQPNVLANYTATLPVL 472
           +I  +PN +  ++++D  G +    +    A+ DA K +  T   Q N   NY +T+PV 
Sbjct: 435 SIALSPNVQWLAVSSD-KGTVHVFSLRVKDAEEDAKKGESATAGAQVNDNCNYGSTVPVT 493

Query: 473 KS 478
           ++
Sbjct: 494 QT 495


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,189,978
Number of Sequences: 37544
Number of extensions: 562097
Number of successful extensions: 1115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5012110656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)