Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G06_e527_14.seq
         (1554 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    25   5.9  
DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    25   5.9  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    25   7.8  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 286 QHEHRIHSESRAHQHNHRRPRGDDEHA 366
           Q +H  HS+   H H+H       +H+
Sbjct: 174 QQQHPGHSQHHHHHHHHHPHHSQQQHS 200


>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 461 LPVLKSYPKVSVDVKWELKNENNVDIICIL 550
           LP L +YP   V   W+   E  ++  C++
Sbjct: 455 LPELANYPAQFVHEPWKASREQQIEYGCVI 484


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 298 RIHSESRAHQHNHRRPRGDDEHAH 369
           R+H  S  H HNHR   G   H H
Sbjct: 414 RLHG-SPTHLHNHRSGGGGRHHHH 436


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,222,953
Number of Sequences: 2352
Number of extensions: 22262
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 182877750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)