Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G06_e527_14.seq
         (1554 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissu...   100   1e-20
BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, t...   100   1e-20
AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, t...    99   2e-20
U53209-1|AAC50658.1|  282|Homo sapiens transformer-2 alpha protein.    33   2.8  
BC017094-1|AAH17094.1|  282|Homo sapiens transformer-2 alpha pro...    33   2.8  
AC023105-1|AAQ96870.1|  282|Homo sapiens unknown protein.              33   2.8  
AB097048-1|BAC77401.1|  282|Homo sapiens putative MAPK activatin...    33   2.8  

>X67698-1|CAA47928.1|  151|Homo sapiens protein ( H.sapiens tissue
           specific mRNA. ).
          Length = 151

 Score =  100 bits (240), Expect = 1e-20
 Identities = 44/127 (34%), Positives = 74/127 (58%)
 Frame = +2

Query: 185 YKDCGSQLATVQTVMVTGCSQDAKECVLRRNSNVSMNIEFTPNQELTSITTDVHGVMMNM 364
           +KDCGS    ++ V V+ C    + C L +  + S+N+ FT N +  S    VHG++M +
Sbjct: 24  FKDCGSVDGVIKEVNVSPCP--TQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGV 81

Query: 365 PIPFPLADRDACKDKGLTCPLQPNVLANYTATLPVLKSYPKVSVDVKWELKNENNVDIIC 544
           P+PFP+ + D CK  G+ CP+Q +   +Y   LPV   YP + + V+W+L+++ N  + C
Sbjct: 82  PVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSLFC 140

Query: 545 ILVPSRI 565
             +P +I
Sbjct: 141 WEIPVQI 147


>BC002532-1|AAH02532.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 protein.
          Length = 151

 Score =  100 bits (240), Expect = 1e-20
 Identities = 44/127 (34%), Positives = 74/127 (58%)
 Frame = +2

Query: 185 YKDCGSQLATVQTVMVTGCSQDAKECVLRRNSNVSMNIEFTPNQELTSITTDVHGVMMNM 364
           +KDCGS    ++ V V+ C    + C L +  + S+N+ FT N +  S    VHG++M +
Sbjct: 24  FKDCGSVDGVIKEVNVSPCP--TQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGV 81

Query: 365 PIPFPLADRDACKDKGLTCPLQPNVLANYTATLPVLKSYPKVSVDVKWELKNENNVDIIC 544
           P+PFP+ + D CK  G+ CP+Q +   +Y   LPV   YP + + V+W+L+++ N  + C
Sbjct: 82  PVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSLFC 140

Query: 545 ILVPSRI 565
             +P +I
Sbjct: 141 WEIPVQI 147


>AK222474-1|BAD96194.1|  151|Homo sapiens Niemann-Pick disease, type
           C2 precursor variant protein.
          Length = 151

 Score =   99 bits (238), Expect = 2e-20
 Identities = 43/127 (33%), Positives = 74/127 (58%)
 Frame = +2

Query: 185 YKDCGSQLATVQTVMVTGCSQDAKECVLRRNSNVSMNIEFTPNQELTSITTDVHGVMMNM 364
           ++DCGS    ++ V V+ C    + C L +  + S+N+ FT N +  S    VHG++M +
Sbjct: 24  FRDCGSVDGVIKEVNVSPCP--TQPCQLSKGQSYSVNVTFTSNVQSKSSKAVVHGILMGV 81

Query: 365 PIPFPLADRDACKDKGLTCPLQPNVLANYTATLPVLKSYPKVSVDVKWELKNENNVDIIC 544
           P+PFP+ + D CK  G+ CP+Q +   +Y   LPV   YP + + V+W+L+++ N  + C
Sbjct: 82  PVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSLFC 140

Query: 545 ILVPSRI 565
             +P +I
Sbjct: 141 WEIPVQI 147


>U53209-1|AAC50658.1|  282|Homo sapiens transformer-2 alpha protein.
          Length = 282

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 283 RQHEHRIHSESRAHQHNHRR 342
           R+H HR ++ SR+H H+HRR
Sbjct: 61  RRHSHRRYTRSRSHSHSHRR 80


>BC017094-1|AAH17094.1|  282|Homo sapiens transformer-2 alpha
           protein.
          Length = 282

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 283 RQHEHRIHSESRAHQHNHRR 342
           R+H HR ++ SR+H H+HRR
Sbjct: 61  RRHSHRRYTRSRSHSHSHRR 80


>AC023105-1|AAQ96870.1|  282|Homo sapiens unknown protein.
          Length = 282

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 283 RQHEHRIHSESRAHQHNHRR 342
           R+H HR ++ SR+H H+HRR
Sbjct: 61  RRHSHRRYTRSRSHSHSHRR 80


>AB097048-1|BAC77401.1|  282|Homo sapiens putative MAPK activating
           protein protein.
          Length = 282

 Score = 33.1 bits (72), Expect = 2.8
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 283 RQHEHRIHSESRAHQHNHRR 342
           R+H HR ++ SR+H H+HRR
Sbjct: 61  RRHSHRRYTRSRSHSHSHRR 80


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,186,870
Number of Sequences: 237096
Number of extensions: 3320027
Number of successful extensions: 9185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9163
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 23239072816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)