Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G06_e527_14.seq
         (1554 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-10|AAB71040.2|  154|Caenorhabditis elegans He1 homologu...    52   8e-07
Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical pr...    30   5.1  
Z81513-7|CAB04179.1|  319|Caenorhabditis elegans Hypothetical pr...    29   6.7  

>AF025467-10|AAB71040.2|  154|Caenorhabditis elegans He1 homologue
           protein 1 protein.
          Length = 154

 Score = 52.4 bits (120), Expect = 8e-07
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
 Frame = +2

Query: 128 KMLIFISIAVLLVGGEAKF-YKDCGSQLATVQTVMVTGCSQDAKE----CVLRRNSNVSM 292
           K +IF+++  L      +  YK C S   TV  V   GC    K+    C+ ++ S   +
Sbjct: 2   KTVIFLALLGLAAAEFIEIGYKVCKSD-GTVSQVKADGCELTVKDGKKVCLFKKGSRPII 60

Query: 293 NIEFTPNQELTSITTDVHG-VMMNMPIPFPLADRDACKDKGLTCPLQPNVLANYTATLPV 469
            I F P+++   + T V   V  +  + FP  + DAC   G+ CP+       +  ++ +
Sbjct: 61  QIAFKPSKDTDKLKTSVRAKVGGSAMVDFPQTNSDAC-TYGVKCPVSAGENQIFEQSISI 119

Query: 470 LKSYPKVSV-DVKWELKNENNVDIICILVPSRI 565
            +++P   V  V W+L   ++   +CI+  + I
Sbjct: 120 TENHPAGEVIQVNWQLTRPDSGKEVCIIFLAEI 152


>Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical
           protein Y6G8.5 protein.
          Length = 440

 Score = 29.9 bits (64), Expect = 5.1
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = +2

Query: 89  YHNTSARSPFLI*KMLIFISIAVLLVGGE---AKFYKDCGSQLATVQTVMVTGCSQDAKE 259
           ++N  +    L   +L F SI +L+ G E    +F+  CG Q + +     TG   DA E
Sbjct: 277 FNNFPSSKMHLFLNILAFASIGLLVNGEEWCMTQFF--CGYQHSVITYPFFTGKVADADE 334

Query: 260 CVLR-RNSNVSMNIEFTPN 313
           C  R  N+   M+ EF  N
Sbjct: 335 CKNRCLNNPACMSSEFRYN 353


>Z81513-7|CAB04179.1|  319|Caenorhabditis elegans Hypothetical
           protein F26D2.9 protein.
          Length = 319

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -1

Query: 435 FGWSGQVRPLSLQASLSARGNGMGMFIITPWT-SVVMLVSS*FGVNSMFMLTLLFLRSTH 259
           FG  G +  L++      R + + +F+I   T  +V +  + F +  M+   LLFL  + 
Sbjct: 52  FGLFGSIFHLTVLTQKPIRNSSVTIFLIGIATCDLVRMFETIFSLGKMYYKQLLFLHISQ 111

Query: 258 SLAS*LHPVTMTVCTVAN 205
           +    L  + MT+  V N
Sbjct: 112 TCVPPLSYIDMTIFVVLN 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,700,534
Number of Sequences: 27780
Number of extensions: 515229
Number of successful extensions: 1196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4483683936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)