Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G05_e519_13.seq
         (1532 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    24   3.4  
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    24   3.4  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   6.0  

>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 531 GQLLFVGRRSGKYLRIEVISESLVEGTNVKVQ 436
           G  +FV   +GK + +EV     +E    K+Q
Sbjct: 76  GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 107



 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 531 GQLLFVGRRSGKYLRIEVISESLVEGTNVKVQ 436
           G  +FV   +GK + +EV     +E    K+Q
Sbjct: 152 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 183



 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 531 GQLLFVGRRSGKYLRIEVISESLVEGTNVKVQ 436
           G  +FV   +GK + +EV     +E    K+Q
Sbjct: 228 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 259



 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 531 GQLLFVGRRSGKYLRIEVISESLVEGTNVKVQ 436
           G  +FV   +GK + +EV     +E    K+Q
Sbjct: 304 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 335



 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 531 GQLLFVGRRSGKYLRIEVISESLVEGTNVKVQ 436
           G  +FV   +GK + +EV     +E    K+Q
Sbjct: 380 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 411



 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 531 GQLLFVGRRSGKYLRIEVISESLVEGTNVKVQ 436
           G  +FV   +GK + +EV     +E    K+Q
Sbjct: 456 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 487



 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 531 GQLLFVGRRSGKYLRIEVISESLVEGTNVKVQ 436
           G  +FV   +GK + +EV     +E    K+Q
Sbjct: 532 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 563



 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 531 GQLLFVGRRSGKYLRIEVISESLVEGTNVKVQ 436
           G  +FV   +GK + +EV     +E    K+Q
Sbjct: 608 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 639


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 531 GQLLFVGRRSGKYLRIEVISESLVEGTNVKVQ 436
           G  +FV   +GK + +EV     +E    K+Q
Sbjct: 48  GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 79


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 325 GRHRLA*GPCAEDSTSEIQVSGAPRGGDRPT 233
           G H  +  P  E S  ++Q S  P+ G  PT
Sbjct: 159 GYHPSSSYPANEISCPQVQWSATPQAGSTPT 189


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,439
Number of Sequences: 336
Number of extensions: 4574
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 46091250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)