Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G05_e519_13.seq
         (1532 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 39   0.012
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          38   0.016
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)                 30   5.7  
SB_3601| Best HMM Match : DUF765 (HMM E-Value=3.9)                     30   5.7  
SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7)                  29   7.5  

>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 38.7 bits (86), Expect = 0.012
 Identities = 40/141 (28%), Positives = 53/141 (37%), Gaps = 3/141 (2%)
 Frame = +1

Query: 283 LNPQHTVPTLVDDGLSIWESRAIITYLVNKYGKGSSLYPEDARARALVDQRLYFDIGTLY 462
           L+P +T+P L     + + S  II YL     K   LY  D   R  VDQ  + DI T  
Sbjct: 43  LSPFNTLPLLETKEGTFFSSNTIIRYLAASSDK---LYGSDLFQRGQVDQ--WLDITTCD 97

Query: 463 QRFGDYFYPQVFAGAPADKEKL-AKIEDALQLLDKFLDGQKYAAGPNXXXXXXXXXXXXX 639
                        G   +  K+ A I   L  ++K L G+K+  G +             
Sbjct: 98  FEAAVAAVAIAKEGRDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSVATSIA 157

Query: 640 XFEAS--DIDFKKYPNIKRWY 696
               S  D D K Y NI  WY
Sbjct: 158 VILTSLGDEDRKPYQNIVSWY 178


>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 38.3 bits (85), Expect = 0.016
 Identities = 22/86 (25%), Positives = 44/86 (51%)
 Frame = +1

Query: 268 PEFLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYGKGSSLYPEDARARALVDQRLYFD 447
           PE+L +NP   VP +V +G +++ES   I ++   +    ++ P+D   RA    R++ D
Sbjct: 299 PEWLAINPNGLVPVIVHNGNAVYESSICIEFIDEAFSTPVTILPKDPYKRA--HGRMWGD 356

Query: 448 IGTLYQRFGDYFYPQVFAGAPADKEK 525
              + ++   +FY  +      D+E+
Sbjct: 357 F--VSKKLVPHFYTMLLKQDKEDQEE 380


>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
 Frame = +2

Query: 440 TLTLVPSTRDSEITS-IRKYLPERLPTKRSWPRSRTLSSFW--TNSSMVKSTQPALI*P* 610
           T T +PST+    T      LP       +   + TL S    T   +  +T P+   P 
Sbjct: 225 TTTTIPSTKQPTTTQQTTTTLPSTKQPTTTQQTTTTLPSTKQPTTPQLTTTTFPSTKQPT 284

Query: 611 LT*ASSQACPASKRPISTSKNTLTLKGGMKQSEAQRQVTRKPMRKASKLSNPS 769
            T  ++   P++K+P +T + T TL     +       TR+P  + ++   P+
Sbjct: 285 TTQQTTATLPSTKQPTTTQQTTATLPTPSTKPTTVSPTTRQPPPEPTEPLEPT 337


>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
          Length = 527

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +2

Query: 401 KTLERGRSSISACTLTLVPSTRDSEITSIRKYLPERLPTKRSWPRSRTLSSF--WTNSSM 574
           KTL+         T T+  + + S +   +  LPER  TK   PRS+TL S   +TNSSM
Sbjct: 66  KTLDHIEIQQGFKTFTIEDTIKPSSLKPPQ--LPER--TKLRKPRSKTLDSIPVYTNSSM 121

Query: 575 VKSTQP 592
           V    P
Sbjct: 122 VNLLYP 127


>SB_3601| Best HMM Match : DUF765 (HMM E-Value=3.9)
          Length = 146

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 113 HTQTRSATANNXSCRIXCSPGXXH*XLERPPPR 15
           +T+T+   A+N +    CSPG     LERPPPR
Sbjct: 9   NTETKPVGAHNMAGSNSCSPGDPL-VLERPPPR 40


>SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7)
          Length = 177

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 341 RAPSSLTWSTSTVKAAASTQKTLERGRSSISACTLTLVPSTRDSEITSIRKYLPERLPT 517
           R P  ++ +T+T+         L    S+ +  T+     T +S ITS+   LP  LPT
Sbjct: 80  RVPRCISPTTATLTTETIAASQLTPSSSATTTTTIRTNTKTTESTITSLSTSLPVILPT 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,387,174
Number of Sequences: 59808
Number of extensions: 568447
Number of successful extensions: 1673
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4988555225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)