Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G04_e511_14.seq
         (1524 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   0.64 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   0.64 
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    25   2.0  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    25   2.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   6.0  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   6.0  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 358 PLLVPDPTSPYRILHLLLHYPQTHPTHLTPRNR-NRNRHRILPP 230
           P ++  P +P+    + L  P  HP H  PRN    N H I  P
Sbjct: 718 PYMLQSPLTPHEAFDVKLP-PPPHPHHQPPRNPVGTNPHDINNP 760


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 0.64
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 358 PLLVPDPTSPYRILHLLLHYPQTHPTHLTPRNR-NRNRHRILPP 230
           P ++  P +P+    + L  P  HP H  PRN    N H I  P
Sbjct: 610 PYMLQSPLTPHEAFDVKLP-PPPHPHHQPPRNPVGTNPHDINNP 652


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 164 KTISRTKNLK-KKMTHTNRLMRKRRKNPMTVPITIPRRQMSRMRLGIVKKKMKNPVRTGR 340
           +T +R + L+ +K  HTN  + +RR+  M   + +  RQ+ ++     + K+K  ++  +
Sbjct: 228 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQI-KIWFQNRRMKLKKEIQAIK 286

Query: 341 IWNEK 355
             NE+
Sbjct: 287 ELNEQ 291


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 164 KTISRTKNLK-KKMTHTNRLMRKRRKNPMTVPITIPRRQMSRMRLGIVKKKMKNPVRTGR 340
           +T +R + L+ +K  HTN  + +RR+  M   + +  RQ+ ++     + K+K  ++  +
Sbjct: 10  QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQI-KIWFQNRRMKLKKEIQAIK 68

Query: 341 IWNEK 355
             NE+
Sbjct: 69  ELNEQ 73


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
            transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 1305 KXXNKSKGEGXXEG 1264
            K  NK+KGEG  EG
Sbjct: 298  KKENKTKGEGGSEG 311


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
            protein.
          Length = 325

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 1305 KXXNKSKGEGXXEG 1264
            K  NK+KGEG  EG
Sbjct: 300  KKENKTKGEGGSEG 313


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,503
Number of Sequences: 336
Number of extensions: 3264
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45783975
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)