Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G04_e511_14.seq
         (1524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    35   0.026
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    34   0.059
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    33   0.14 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    31   0.55 
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    31   0.55 
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    29   1.7  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    29   2.2  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   3.0  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    27   5.2  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    27   5.2  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    27   6.8  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   6.8  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    27   9.0  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    27   9.0  

>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 35.1 bits (77), Expect = 0.026
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
 Frame = +1

Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRE---NDR 774
           RD+HH+ S+ +R R+   N+  S D + HS  ++S++  R+  RE   NDR
Sbjct: 173 RDRHHR-SNQDRSRERSDNEQHSSDKREHS--RRSYRNDRNNWRERTHNDR 220



 Score = 32.3 bits (70), Expect = 0.18
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +1

Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDRSS 780
           +++ H+  HH  ++     +S   D+++HS D++ H R    S  NDR++
Sbjct: 168 KERRHRDRHHRSNQDRSRERS---DNEQHSSDKREHSR---RSYRNDRNN 211


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 33.9 bits (74), Expect = 0.059
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 637 KHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDRSS 780
           +H +S     +R S  +++   D +    D +SH+R R  SR  +RSS
Sbjct: 183 RHSRSRRRYEERSSRSSRAHDYDYEDLRDDDRSHERKRSRSRPRERSS 230



 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 643 HKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDRSS 780
           H++  H R   S  +   S+    HS       R+   SR+ DRSS
Sbjct: 110 HRTPRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSS 155


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 655 HHERDRKSEHNKS--SSKDSKRHSGDQKSHKRARDESRE 765
           HH R R+S+H +   S + S R +GD+  H+R   E  E
Sbjct: 31  HHSRHRESKHGRHDRSERPSSREAGDRSRHERFSKEPLE 69


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +1

Query: 634 DKHHKSSHHERDRKSEHNKSSSKDSKRHSG--DQKSHKRARDE 756
           ++H    HH      EH+K   KD + H G  D++ HK  +D+
Sbjct: 348 EEHEGPEHHRGPEDKEHHKGP-KDKEHHKGPKDKEHHKGPKDK 389



 Score = 29.9 bits (64), Expect = 0.97
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +1

Query: 631 RDK-HHKS----SHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDR 774
           +DK HHK      HH+  +  EH+K   KD + H G +        + + N+R
Sbjct: 378 KDKEHHKGPKDKEHHKGPKDKEHHKGP-KDKEHHKGPKDKEHHQGPKEKHNER 429



 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRE 765
           + KHHK  H +   K  H K    DS     ++  H    DE RE
Sbjct: 153 KGKHHKGKHAKGKGKKSHPKPED-DSVFFDDERPKHHEFDDEDRE 196


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 30.7 bits (66), Expect = 0.55
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 655 HHERDRKSEH---NKSSSKDSKRHSGDQKSHKRAR 750
           H E+ RK +H   ++S   DS RHS   + H R+R
Sbjct: 176 HREKRRKLKHESSDRSDKSDSNRHSRHHRRHSRSR 210


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 649 SSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDRS 777
           SS+ E+ +K   +  S +  K+HS ++K  K  + ++ EN+ S
Sbjct: 3   SSNWEKLKKKLDSAKSGRVEKKHSNEKKYLKSVKGKNNENENS 45


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +1

Query: 634 DKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESR 762
           D HH S H  +  KS   K + K  + H  +  + K    + +
Sbjct: 47  DTHHSSKHELKKLKSHFLKDTLKHKRNHHANSNNEKHENSDKK 89


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 637 KHHKSSHHERDRKSEHNKS-SSKDSKRHSGDQKSHKRARDESRENDRS 777
           KH + S HE   +S+H     SK +++   D+K  K     SR +  S
Sbjct: 596 KHKRDSKHEARPESKHESHRESKSAEKDKKDKKDKKEDSKRSRSHSVS 643


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 634 DKHHKSSHHERDRKSEHN--KSSSKDSKRHSGDQKSHKRARDESRENDRSS 780
           D    SS  E +  SE +   SSS DS+  S  + S   +     E+D SS
Sbjct: 235 DSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSS 285


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 299 IVKKKMKNPVRTGRIWNEKRPRKIKRSVSTTVKISTVNGREGTPD 433
           I+K  +K+ VR   I N   P+K KR++   +K        G+PD
Sbjct: 307 IIKLPLKDNVRPREIGNVNNPKKRKRALELALK----GSESGSPD 347


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 676 SEHNKSSSKDSKRHSGDQKSHKRARDESRENDRSS 780
           S   KSS+K SK+ S  + S   +  +S  NDRSS
Sbjct: 188 STMTKSSTKTSKKKSSKKNSKSESNQDS-SNDRSS 221


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 631  RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDE 756
            R  ++ S++  R+R SE N  +S D+KR    +   K  R +
Sbjct: 1484 RVSNNNSTNVSRERSSEANHRTSNDNKRDEVTEGKDKNKRQD 1525


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 637 KHHKSSHHERDRKSEHNKSSSKDSKR-HSGDQKSHKRARDES 759
           K H+    E  R+   +    ++  R H G ++  +R RDES
Sbjct: 16  KRHRDYRDEEPRRERGSGGIGREDPRGHYGSERPRRRRRDES 57


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 400 NLHGRRYAPFYLPRPLLVPDPTSPYRILHLLLHYPQ-THPTHLTPRNRNRNRH 245
           N H   Y    L    L+ D           +H+ Q +HPTH +P+N ++ R+
Sbjct: 80  NKHNEEYFRLLLAANALLSDKRRREEYDRFGIHWNQPSHPTHPSPQNWSQARY 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,423,688
Number of Sequences: 5004
Number of extensions: 51041
Number of successful extensions: 246
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 854316994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)