Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_G04_e511_14.seq
(1524 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 37 0.030
At5g63720.1 68418.m07998 hypothetical protein 37 0.040
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 36 0.053
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 36 0.053
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 36 0.053
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 36 0.093
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 36 0.093
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 35 0.16
At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing prote... 33 0.38
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 33 0.50
At5g48610.1 68418.m06012 expressed protein ; expression supporte... 33 0.66
At3g52220.1 68416.m05737 expressed protein 33 0.66
At3g25840.1 68416.m03219 protein kinase family protein contains ... 32 0.87
At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family p... 32 0.87
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 32 0.87
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 32 1.1
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp... 31 1.5
At5g19480.1 68418.m02321 expressed protein 31 1.5
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 31 1.5
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 31 1.5
At5g55300.1 68418.m06891 DNA topoisomerase I identical to Swiss-... 31 2.0
At5g53440.1 68418.m06641 expressed protein 31 2.0
At5g12230.1 68418.m01435 expressed protein 31 2.6
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 31 2.6
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 31 2.6
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein... 30 3.5
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 30 3.5
At3g59800.1 68416.m06673 expressed protein 30 4.6
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 29 6.1
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma... 29 6.1
At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH) domain... 29 6.1
At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH) domain... 29 6.1
At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH) domain... 29 6.1
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 29 6.1
At4g29100.1 68417.m04165 ethylene-responsive family protein cont... 29 8.1
At3g28770.1 68416.m03591 expressed protein 29 8.1
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 29 8.1
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 37.1 bits (82), Expect = 0.030
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRE 765
RD+HH+ H +R R+ + D + +R+RD RE
Sbjct: 100 RDRHHRDRHRDRSRERSEKRDDLDDDHHRRSRDRDRRRSRDRDRE 144
Score = 32.7 bits (71), Expect = 0.66
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 646 KSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDR 774
K + +RDR+ + ++ S+D R + R R + R+ DR
Sbjct: 60 KDGNKDRDREKDRDREKSRDRDREKSRDRDRDRERSKDRQRDR 102
Score = 32.7 bits (71), Expect = 0.66
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSS--SKDSKRHSGDQKSHKRARDESRENDRS 777
RD+ + H R R ++S S+ RH + +S R+R S+ RS
Sbjct: 139 RDRDREVRHRRRSRSRSRSRSERRSRSEHRHKSEHRSRSRSRSRSKSKRRS 189
Score = 30.3 bits (65), Expect = 3.5
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +1
Query: 646 KSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDRS 777
K + + RD+ ++ KD R + +++RD R+ +RS
Sbjct: 52 KDNENGRDKDGNKDRDREKDRDREKSRDRDREKSRDRDRDRERS 95
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +1
Query: 637 KHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDR 774
K S E+D ++ +K +KD R + R RD + DR
Sbjct: 43 KKDSSKISEKDNENGRDKDGNKDRDREKDRDREKSRDRDREKSRDR 88
>At5g63720.1 68418.m07998 hypothetical protein
Length = 492
Score = 36.7 bits (81), Expect = 0.040
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 640 HHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESR 762
HH HH++++ S NK SK +H K KR ES+
Sbjct: 375 HHHHHHHDKEKPSAWNKLQSKFHHKHQEKSKERKRPMSESK 415
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 36.3 bits (80), Expect = 0.053
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDR 774
+D+ H+ HH R +H++ + +R D ++R+RD R++DR
Sbjct: 89 KDRDHRERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRD--RDHDR 134
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKR-HSGDQKSHKRARDESRE 765
R++ + S RDR E +K S+D R H R RD SRE
Sbjct: 64 RERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHHRSSRHRDHSRE 109
Score = 29.9 bits (64), Expect = 4.6
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +1
Query: 631 RDKHHKSSHHE---RDRKSEHNKSSSKDSKRHSGDQKSHKRARDE 756
R++HH+SS H R+R + D + H R RD+
Sbjct: 94 RERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDD 138
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 36.3 bits (80), Expect = 0.053
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDR 774
+D+ H+ HH R +H++ + +R D ++R+RD R++DR
Sbjct: 89 KDRDHRERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRD--RDHDR 134
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKR-HSGDQKSHKRARDESRE 765
R++ + S RDR E +K S+D R H R RD SRE
Sbjct: 64 RERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHHRSSRHRDHSRE 109
Score = 29.9 bits (64), Expect = 4.6
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +1
Query: 631 RDKHHKSSHHE---RDRKSEHNKSSSKDSKRHSGDQKSHKRARDE 756
R++HH+SS H R+R + D + H R RD+
Sbjct: 94 RERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDD 138
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 36.3 bits (80), Expect = 0.053
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDR 774
+D+ H+ HH R +H++ + +R D ++R+RD R++DR
Sbjct: 89 KDRDHRERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRD--RDHDR 134
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKR-HSGDQKSHKRARDESRE 765
R++ + S RDR E +K S+D R H R RD SRE
Sbjct: 64 RERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHHRSSRHRDHSRE 109
Score = 29.9 bits (64), Expect = 4.6
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +1
Query: 631 RDKHHKSSHHE---RDRKSEHNKSSSKDSKRHSGDQKSHKRARDE 756
R++HH+SS H R+R + D + H R RD+
Sbjct: 94 RERHHRSSRHRDHSRERGERRERGGRDDDDYRRSRDRDHDRRRDD 138
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 35.5 bits (78), Expect = 0.093
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 637 KHHKSSHHERDRKSEHNKSSSKDSKRHSG-DQKSHKRARDESRENDRSS 780
KH K + +D++S H++S + R S D+ H R R R+++ SS
Sbjct: 723 KHSKDVDYSKDKRSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSS 771
Score = 31.5 bits (68), Expect = 1.5
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +1
Query: 631 RDKHHKSS-HHE----RDRKSEHNKSSSKDSKR--HSGDQKS-HKRARDESRENDRS 777
R +H KSS HE D + EH SSK SK +S D++S H R+R + D S
Sbjct: 695 RHRHSKSSDRHELYDSSDNEGEHRHRSSKHSKDVDYSKDKRSHHHRSRKHEKHRDSS 751
Score = 29.9 bits (64), Expect = 4.6
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRH----SGDQKSHKRARDESREND 771
+ KH SS E +S H SK S RH S D + R R D
Sbjct: 677 KHKHESSSDDEYHSRSRHRHRHSKSSDRHELYDSSDNEGEHRHRSSKHSKD 727
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 35.5 bits (78), Expect = 0.093
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 637 KHHKSSHHERDRKSEHNKSSSKDSKRHSG-DQKSHKRARDESRENDRSS 780
KH K + +D++S H++S + R S D+ H R R R+++ SS
Sbjct: 723 KHSKDVDYSKDKRSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSS 771
Score = 31.5 bits (68), Expect = 1.5
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +1
Query: 631 RDKHHKSS-HHE----RDRKSEHNKSSSKDSKR--HSGDQKS-HKRARDESRENDRS 777
R +H KSS HE D + EH SSK SK +S D++S H R+R + D S
Sbjct: 695 RHRHSKSSDRHELYDSSDNEGEHRHRSSKHSKDVDYSKDKRSHHHRSRKHEKHRDSS 751
Score = 29.9 bits (64), Expect = 4.6
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRH----SGDQKSHKRARDESREND 771
+ KH SS E +S H SK S RH S D + R R D
Sbjct: 677 KHKHESSSDDEYHSRSRHRHRHSKSSDRHELYDSSDNEGEHRHRSSKHSKD 727
>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
domain, PF03343: SART-1 family
Length = 820
Score = 34.7 bits (76), Expect = 0.16
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 631 RDK-HHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDR 774
RDK H + ERDRK ++ + K+ R ++ ++RD +E D+
Sbjct: 52 RDKDHRRDKEKERDRKRSRDEDTEKEISRGRDKEREKDKSRDRVKEKDK 100
Score = 31.1 bits (67), Expect = 2.0
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Frame = +1
Query: 631 RDKHHKSSHHERD------RKSEHNKSSSKD-SKRHSGDQKSHK---RARDESRENDRS 777
++K H+S E+D R +H + K+ ++ S D+ + K R RD+ RE D+S
Sbjct: 33 KEKDHRSKDKEKDYDREKIRDKDHRRDKEKERDRKRSRDEDTEKEISRGRDKEREKDKS 91
Score = 29.5 bits (63), Expect = 6.1
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +1
Query: 661 ERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDRS 777
E+D++ E N+ ++++R + +K RAR + R + +S
Sbjct: 97 EKDKEKERNRHKDRENERDNEKEKDKDRARVKERASKKS 135
>At3g03340.1 68416.m00332 LUC7 N_terminus domain-containing protein
contains Pfam domain PF03194: LUC7 N_terminus
Length = 402
Score = 33.5 bits (73), Expect = 0.38
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQ-KSHKRARDESRENDRS 777
R+ + S +R+++ E ++ +D R S D+ + H R R++ R+ DRS
Sbjct: 323 RNSKERESSKDREKEQETSREHRRDYDRRSRDRDRHHDRDREQDRDYDRS 372
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDR 774
R + HH+RDR+ + + S R +S R+RD R+ DR
Sbjct: 350 RRSRDRDRHHDRDREQDRDYDRSHSRSRRR--SRSRSRSRDRPRDYDR 395
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 33.1 bits (72), Expect = 0.50
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 634 DKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHK-RARDESRENDRSS 780
D+ HKS E+D E+ + +DS Q S K R+R E+D S
Sbjct: 510 DRRHKSHREEKDSHREYKQQRDRDSDEFDRGQSSLKSRSRSRMSEDDHRS 559
>At5g48610.1 68418.m06012 expressed protein ; expression supported
by MPSS
Length = 470
Score = 32.7 bits (71), Expect = 0.66
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQK-SHKRARDESRENDR 774
++K HK +R+ K + +K SKD ++ ++K HK +D+ + ++
Sbjct: 16 KEKKHKKDKEKREGKEKKSKDRSKDKQKERKEKKDKHKDQKDKEKGKEK 64
>At3g52220.1 68416.m05737 expressed protein
Length = 237
Score = 32.7 bits (71), Expect = 0.66
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +1
Query: 637 KHHKSSHHERDRKSE-HNKSSSKDS---KRHSGDQKSHKRARDESRE 765
K K H+R K E H K S++DS K+H ++K KR D +
Sbjct: 191 KREKEERHDRREKRERHEKRSARDSDDRKKHKKEKKEKKRRHDSDSD 237
Score = 30.3 bits (65), Expect = 3.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGD 726
R++H K S + D + +H K + +RH D
Sbjct: 204 RERHEKRSARDSDDRKKHKKEKKEKKRRHDSD 235
>At3g25840.1 68416.m03219 protein kinase family protein contains
Pfam profile: PF00069 eukaryotic protein kinase domain
Length = 935
Score = 32.3 bits (70), Expect = 0.87
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 634 DKHHKSSHHERDRKSEHNKSSSKDSKR-HSGDQKSHKRARDESREND 771
+ HH+ H + K+S + R H H+ RD+ REN+
Sbjct: 8 ESHHRKHHRSSSSSDDTEKASKRHKHRHHKHHHHRHRHHRDKKRENE 54
>At2g40650.1 68415.m05016 pre-mRNA splicing factor PRP38 family
protein contains Pfam profile PF03371: PRP38 family
Length = 355
Score = 32.3 bits (70), Expect = 0.87
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESREND 771
RD+ + SH RDR + + +D R ++ H R RD R+ D
Sbjct: 223 RDRR-RDSHRHRDRDYDRDYDMDRDHDRDYERERGHGRDRDRERDRD 268
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 631 RDKHHKSSHH-ERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESR 762
RD+ H+ ERDR E + +D +R ++S R+RD R
Sbjct: 261 RDRERDRDHYRERDRDRERGRDRERD-RRDRARRRSRSRSRDRKR 304
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 32.3 bits (70), Expect = 0.87
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 646 KSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRE 765
KS +E + E + S S K+ +K HKR+ DES E
Sbjct: 56 KSKKYEEVEEEEKSPSPSPSPKKSKESKKKHKRSSDESEE 95
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 31.9 bits (69), Expect = 1.1
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 646 KSSHHERDRKSEHNKSSSKDSKRHSGDQKSHK-RARDESRENDRSS 780
+SS H D+K E ++ +D +R + H+ R+RD R+ RSS
Sbjct: 40 RSSRHRGDKKKERDED--EDGRRSKRSRSHHRSRSRDRERDRHRSS 83
Score = 31.5 bits (68), Expect = 1.5
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = +1
Query: 640 HHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDR 774
HH+S +R+R + +D R K + +D R+ D+
Sbjct: 67 HHRSRSRDRERDRHRSSREHRDRDREKDVDKEERNGKDRERDRDK 111
>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 930
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKR 744
R H K S H R +KS ++ SS + ++ S +K +R
Sbjct: 892 RSSHKKHSKHRRTKKSSSSRYSSDEEQKESRREKKRRR 929
>At5g19480.1 68418.m02321 expressed protein
Length = 207
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 646 KSSHHERDRKSEHNKSSSKDSKRHSGDQKSHK-RARDESRENDR 774
KS ++DRK +K + + H + HK R +D+ ++ DR
Sbjct: 120 KSESKDKDRKHRKHKDKKEKDREHKKHKHKHKDRIKDKDKDKDR 163
Score = 29.5 bits (63), Expect = 6.1
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = +1
Query: 637 KHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESREND 771
+H K H +DR + +K +D K+ KR + + + D
Sbjct: 142 EHKKHKHKHKDRIKDKDKDKDRDKKKEKSGHHDKKRKNNGTEDAD 186
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 31.5 bits (68), Expect = 1.5
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDR 774
R++H S +R+R S K+S R ++ + RD+ R+ +R
Sbjct: 77 RERHRSSRDKDRERDKVREGSRDKESDRERSSKERDRSDRDKPRDRER 124
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 31.5 bits (68), Expect = 1.5
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 394 HGRRYAPFYLPRPLLVPDPTSPYRILHLLLHYPQTHPTHLTPR-NRNRN 251
H RY P +P+ + P P P+ H YP H H R N+++N
Sbjct: 51 HWMRYPPVLMPQMMYAPPPPMPFSPYH---QYPNHHHFHHQSRGNKHQN 96
>At5g55300.1 68418.m06891 DNA topoisomerase I identical to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 916
Score = 31.1 bits (67), Expect = 2.0
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Frame = +2
Query: 104 ISKGSLKTGAGPS*IPSPML----KTISRTKNLKKKMTHTNRLMRKRRKNPMTVPITIPR 271
+SK + G+G S P+ T++ N K + ++ + + +PM P+T P
Sbjct: 6 VSKPVMDNGSGDSDDDKPLAFKRNNTVASNSNQSKSNSQRSKAVPTTKVSPMRSPVTSPN 65
Query: 272 RQMSRMRLGIVKKKMKNPVRTGRIWNEKRPRKIKRSVSTTVK 397
+ IVK M P + + K P ++ + +TVK
Sbjct: 66 GTTPSNKTSIVKSSM--PSSSSKASPAKSP--LRNDMPSTVK 103
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 631 RDKHH-KSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDR 774
RD+ + HERDR + K S+D H G + R RD R+ R
Sbjct: 363 RDRSRDRDRDHERDRTHDREKDRSRD-YYHDGKRSKSDRERDNDRDVSR 410
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 655 HHERDRKSEHNKSS---SKDSKRHSGDQKSHKRARDESRENDR 774
+HER+R ++++ S +D +R + ++R RD R+ DR
Sbjct: 300 YHERERNRDYDRESDRNERDRERTRDRDRDYERDRDRDRDRDR 342
Score = 30.7 bits (66), Expect = 2.6
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRE 765
RD+ + H+R + ++ S+D R ++H R +D SR+
Sbjct: 344 RDRDRRDYEHDRYHDRDWDRDRSRDRDRDHERDRTHDREKDRSRD 388
Score = 29.5 bits (63), Expect = 6.1
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKS-EHNKSSSKDSKR-HSGDQ-KSHKRARDESRENDRS 777
RD+ + +RDR+ EH++ +D R S D+ + H+R R RE DRS
Sbjct: 336 RDRD-RDRERDRDRRDYEHDRYHDRDWDRDRSRDRDRDHERDRTHDREKDRS 386
>At5g12230.1 68418.m01435 expressed protein
Length = 221
Score = 30.7 bits (66), Expect = 2.6
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESREND 771
+ K HK ++DR+ + +K KD + K R +D++ +D
Sbjct: 128 KHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHD 174
Score = 29.9 bits (64), Expect = 4.6
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +1
Query: 646 KSSHHERDRKSEHNKSSSKD---SKRHSGDQKSHK-RARDESRENDR 774
KS +DR +H K +D + H + HK R++D+ ++ DR
Sbjct: 117 KSKSESKDRDRKHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDR 163
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/48 (27%), Positives = 18/48 (37%)
Frame = +1
Query: 637 KHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDRSS 780
KH K ++D+ EH K K R K R R + + S
Sbjct: 128 KHKKHKDRDKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDS 175
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 30.7 bits (66), Expect = 2.6
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDS----KRHSGDQKSHKRARDESREND 771
R++ + S + DR+ + S+D +R D +SH+ ++ RE D
Sbjct: 442 RERKERESREDEDRRRRRRREESRDKESRRERDEDDHRSHRDYKERRRERD 492
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles PF01846:
FF domain, PF00397: WW domain
Length = 946
Score = 30.7 bits (66), Expect = 2.6
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGD-QKSHKRARDESREND 771
R +HH +S + + S K S++H D +KS K A E++
Sbjct: 873 RRRHHNNSDEDVSSDRDDRDESKKSSRKHGNDRKKSRKHANSPESESE 920
>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 595
Score = 30.3 bits (65), Expect = 3.5
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Frame = +1
Query: 631 RDKHHKSSHHERDRK-----------SEHNKSSSKDSKRHSGDQKSHKRARDESREND 771
R+KH+ H++ ++ S++ +S+S KR D KSH R R + ND
Sbjct: 411 REKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSND 468
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 643 HKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDR 774
+KS H ER + ++ S K K+H + +R E R ++R
Sbjct: 454 YKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDER 497
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 30.3 bits (65), Expect = 3.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRAR 750
R H K S H+ S H+KS SK S+ S + H+R R
Sbjct: 859 RSPHSKHSQHKNTLYSSHDKSRSKRSRSRS--RSPHRRHR 896
>At3g59800.1 68416.m06673 expressed protein
Length = 186
Score = 29.9 bits (64), Expect = 4.6
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKS-EHNKSSSKDSKRHSGDQKSHKRARDESRENDRSS 780
+ +++ S +D+K + K SK K +S + S DESR + SS
Sbjct: 97 KGRNYSSDKSRKDKKDRDSKKKKSKKRKHYSSSESSSSSDEDESRRSRSSS 147
Score = 29.1 bits (62), Expect = 8.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 637 KHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDE 756
KH+ SS + ++ S SKR S +K HK +RD+
Sbjct: 124 KHYSSSESSSSSDEDESRRSRSSSKR-SKKEKKHKSSRDK 162
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 29.5 bits (63), Expect = 6.1
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 661 ERDRKSEHNKSSSKDSKRHSGDQKSHKRARDES-REND 771
ER K E ++ SSK KRH G+ KS R S RE D
Sbjct: 856 ERKEKREDSQESSK--KRHRGENKSQSPPRKSSTRERD 891
>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
domain-containing protein contains Pfam profiles PF00612:
IQ calmodulin-binding motif, PF02179: BAG (Apoptosis
regulator Bcl-2 protein) domain
Length = 1043
Score = 29.5 bits (63), Expect = 6.1
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 164 KTISRTKNLKKKMTHTNRL-MRKRRKNPMTVPIT 262
K SR K+L+KK++H + +R+R PM+V T
Sbjct: 1006 KLTSRVKSLEKKLSHKKKTQIRRRASKPMSVSPT 1039
>At2g43160.3 68415.m05361 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 29.5 bits (63), Expect = 6.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESREND 771
RD+ S ER+ + +S+D RHS D + + RD +R++D
Sbjct: 184 RDEERSSYGREREYGYRDDDRNSRDGDRHSRDSED-RYGRDGNRDDD 229
>At2g43160.2 68415.m05360 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 29.5 bits (63), Expect = 6.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESREND 771
RD+ S ER+ + +S+D RHS D + + RD +R++D
Sbjct: 184 RDEERSSYGREREYGYRDDDRNSRDGDRHSRDSED-RYGRDGNRDDD 229
>At2g43160.1 68415.m05359 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to Af10-protein (GI:1724114) [Avena fatua]
Length = 895
Score = 29.5 bits (63), Expect = 6.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESREND 771
RD+ S ER+ + +S+D RHS D + + RD +R++D
Sbjct: 184 RDEERSSYGREREYGYRDDDRNSRDGDRHSRDSED-RYGRDGNRDDD 229
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 29.5 bits (63), Expect = 6.1
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +1
Query: 634 DKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRE 765
++ + RD++ E + D +R ++ +RARD RE
Sbjct: 358 EERRREDQRARDKEREREREREHDRERERQRERERQRARDRERE 401
>At4g29100.1 68417.m04165 ethylene-responsive family protein
contains similarity to ethylene-inducible ER33 protein
[Lycopersicon esculentum] gi|5669656|gb|AAD46413
Length = 407
Score = 29.1 bits (62), Expect = 8.1
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -3
Query: 313 LLLHYPQTHPTHLTPRNRNRNRHRILP-PFPH 221
L+ H P H+TP N N R R++P PFPH
Sbjct: 35 LMGHQQAPLPPHMTP-NNNYLRPRMMPTPFPH 65
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.1 bits (62), Expect = 8.1
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +1
Query: 637 KHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDR 774
++HKS +++ K EH + S + ++K H+ ++ +E D+
Sbjct: 1074 ENHKSK--KKEDKKEHEDNKSMKKEEDKKEKKKHEESKSRKKEEDK 1117
Score = 29.1 bits (62), Expect = 8.1
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +1
Query: 646 KSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESRENDR 774
K E + KSE + S S+++ D+K K ++D+ ++ ++
Sbjct: 1153 KKEKKENEEKSETKEIESSKSQKNEVDKKEKKSSKDQQKKKEK 1195
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 29.1 bits (62), Expect = 8.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +1
Query: 631 RDKHHKSSHHERDRKSEHNKSSSKDSKRHSGDQKSHKRARDESR 762
R H K+SH +R+R+ E ++ + R G K A++ +
Sbjct: 736 RRSHDKASHRDRERERERDRDRDRVRDRGDGHSGPTKDAKESGK 779
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,454,030
Number of Sequences: 28952
Number of extensions: 293861
Number of successful extensions: 1490
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4077124416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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