Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G03_e503_13.seq
         (1562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7919| Best HMM Match : Herpes_UL1 (HMM E-Value=2.9)                 69   1e-11
SB_29821| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   2e-07
SB_24638| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   8e-05
SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086)                  33   0.47 
SB_27029| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.47 
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.3  
SB_20152| Best HMM Match : CRAL_TRIO_N (HMM E-Value=2.6)               31   3.3  
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.3  

>SB_7919| Best HMM Match : Herpes_UL1 (HMM E-Value=2.9)
          Length = 262

 Score = 68.5 bits (160), Expect = 1e-11
 Identities = 42/123 (34%), Positives = 65/123 (52%)
 Frame = +3

Query: 99  YNPVFFSYLMITQKSVVLFWGDGKLPLTVQEHLNREGVDGFEGAGYTEVVERLECLAKEL 278
           +NPVFF+Y ++T  +V LF    K+  +V++HL  +  D  E     +    ++   +E 
Sbjct: 131 FNPVFFAYAIVTLDNVFLFIDQNKIDSSVRKHLELDNSDSNETRITLKEYNEIQDALREE 190

Query: 279 CQSGDGRHSVWLSSDASEAIHRAASGKNVLKKPLELISEVSPVALAKLIKNEVELEGFRN 458
              G     +W+SS++S A+         L     ++ E SPVAL+K +KNEVELEG R 
Sbjct: 191 VAKGS---RIWISSNSSMAL-------TSLVPETCMLDESSPVALSKALKNEVELEGLRQ 240

Query: 459 CHV 467
            HV
Sbjct: 241 SHV 243


>SB_29821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 54.8 bits (126), Expect = 2e-07
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
 Frame = +3

Query: 381 ELISEVSPVALAKLIKNEVELEGFRNCHV----RDGVAVVRFFRWLHDRIDSGDNITEIE 548
           +L+ + SPV L K IKN VE++G RN H              F          +NI    
Sbjct: 2   KLLLKFSPVKLPKAIKNSVEIKGMRNAHKFQRGHTSGTTQYMFEGSAVTFSRCENIAFSV 61

Query: 549 AADKLLEF-RGDESDFVGPSFETXXXXXXXXXXXHYSPSREGEQTVINPGSMFLLDSGGQ 725
           +   L  F  G +++++GPSF +           HYSP+++ ++  I   S  L+D+G Q
Sbjct: 62  SLQGLRTFSAGKQAEYMGPSFFSIVGYGPNAAIIHYSPTKDSDRQ-ITTDSTLLIDTGSQ 120

Query: 726 YR 731
           Y+
Sbjct: 121 YK 122


>SB_24638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 46.0 bits (104), Expect = 8e-05
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
 Frame = +3

Query: 381 ELISEVSPVALAKLIKNEVELEGFR---NCHVRDGVAVVRFFRWLHDRIDSGD-NITEIE 548
           E +S    +   + + ++VE EG +   N  +RD V +  +  WL   ++ GD N+TEI 
Sbjct: 23  EAVSMCVKIKPYEAVLDDVEKEGLKPKANIWIRDAVVISEYLDWLEREVEKGDNNLTEIT 82

Query: 549 AADKLLEFR 575
             D+LLEFR
Sbjct: 83  GEDQLLEFR 91


>SB_47678| Best HMM Match : zf-U1 (HMM E-Value=0.0086)
          Length = 502

 Score = 33.5 bits (73), Expect = 0.47
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = -3

Query: 621 PLWSRKTVPRNPIHPRETPRVYQQLLSQ*YYHRNRSYRAASGRISPPRRHHGRDSFGNP 445
           PL S   +PR   HP++  +      +Q Y H   SY+ AS + +  +R HG  S+ NP
Sbjct: 371 PLLSNSLLPREAFHPQQESQQQHYNYNQSYSH-PYSYQPASQQQTSVQRDHGA-SYANP 427


>SB_27029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 33.5 bits (73), Expect = 0.47
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 99  YNPVFFSYLMITQKSVVLFWGDGKLPLTVQEHLN 200
           +NPVF SY++ T   V LF    K+   VQ HL+
Sbjct: 250 FNPVFISYVIATASDVTLFIDKQKVTADVQAHLS 283


>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1011

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -2

Query: 331 SLASLESQTECLPSPL*HSSFAKHSSLSTTSVYPAPSKPSTPSLLRCSCT 182
           S  S  S    L +P+  S+ +  S+ ST S+   PS PSTPS     CT
Sbjct: 226 STPSTPSTPSTLSTPITPSTPSTPSTPSTPSMPSTPSTPSTPSTPSTPCT 275



 Score = 30.7 bits (66), Expect = 3.3
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -2

Query: 331 SLASLESQTECLPSPL*HSSFAKHSSLSTTSVYPAPSKPSTPSLLRCSCT 182
           S  S  S    L +P+  S+ +  S+ ST S+   PS PSTPS     CT
Sbjct: 776 STPSTPSTPSTLSTPITPSTPSTPSTPSTPSMPSTPSTPSTPSTPSTPCT 825


>SB_20152| Best HMM Match : CRAL_TRIO_N (HMM E-Value=2.6)
          Length = 490

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 167 PITPEQHDGFLSDHQIGEEYWIVXLCLIHPRAEXPADPG 51
           P+ P   +   S+H+IG EY +     +HP  E   +PG
Sbjct: 215 PLAPIIEEEGRSEHKIGREYLVYVKYQLHPLPEQNGEPG 253


>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = -2

Query: 322 SLESQTECLPSPL*HSSFAKHSSLSTTSVYPAP--SKP----STPSLLRCSCTVRGSFPS 161
           SL SQ   LPSP       +HS  S     P+P  S+P    S PS   C  +   S PS
Sbjct: 756 SLPSQEHSLPSPEHSQPSPEHSQPSPEHSQPSPEHSQPSPEHSQPSPEHCQPSPEHSQPS 815

Query: 160 PQNS 149
           P++S
Sbjct: 816 PEHS 819


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,154,382
Number of Sequences: 59808
Number of extensions: 910239
Number of successful extensions: 2301
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2283
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5105932995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)