Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_G03_e503_13.seq
(1562 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039716-4|AAB96739.1| 616|Caenorhabditis elegans Aminopeptidas... 106 4e-23
AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical ... 54 2e-07
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr... 30 3.9
U40953-2|AAB52647.1| 483|Caenorhabditis elegans Hypothetical pr... 30 5.1
AC006776-2|AAF60627.1| 172|Caenorhabditis elegans Hypothetical ... 30 5.1
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 29 6.8
>AF039716-4|AAB96739.1| 616|Caenorhabditis elegans Aminopeptidase p
protein 1 protein.
Length = 616
Score = 106 bits (255), Expect = 4e-23
Identities = 93/323 (28%), Positives = 135/323 (41%), Gaps = 3/323 (0%)
Frame = +3
Query: 99 YNPVFFSYLMITQKSVVLFWGDGKLPLTVQEHLNREGVDGFE-GAGYTEVVERLECLAKE 275
YNP+ +SYL + + + +F + KL + H ++ V G Y+ + L+ AKE
Sbjct: 220 YNPLAYSYLFVAMREIHVFIDNEKLDEKSRAHFHKSNVSIHPYGEVYSWISNWLK--AKE 277
Query: 276 LCQSGDGRHSVWLSSDASEAIHRAASGKNVLKKPLELISEVSPVALAKLIKNEVELEGFR 455
+ H V+L+ + + AI +N + + S V AK KN+ E++G R
Sbjct: 278 ASKEP---HMVYLTPETNYAIGSIIGEENSMV-------DTSLVQTAKATKNDHEMQGMR 327
Query: 456 NCHVRDGVAVVRFFRWLHDRIDSGDNITEIEAADKLLEFRGDESDFVGPSFETXXXXXXX 635
N H+RD A+V F WL + SG TEIE ADK+ R + +V SF+T
Sbjct: 328 NSHLRDSAALVEFLCWLEKELLSGKRYTEIELADKIDHLRSLQDKYVTLSFDTISAVGDH 387
Query: 636 XXXXHYSPSREGEQTVINPGSMFLLDSGGQYRGWNDRYNKDTGI*VENPTDDQKGAFTAS 815
HY P E +FLLDSG Y + + NP + T
Sbjct: 388 AALPHYKPLGESGNRKAAANQVFLLDSGAHYGDGTTDVTRT--VWYTNPPKEFILHNTLV 445
Query: 816 PQGXR**SAA--PYSLRXSXVTCXTVFAXLSLVGTSGLDXAHGXGPRXRPYLNVPEGPSG 989
+G + A P + S + T A L GLD HG G YLNV EGP G
Sbjct: 446 LKGHINLARAKFPDGIYGSRLDTLTRDALWKL----GLDFEHGTGHGVGHYLNVHEGPIG 501
Query: 990 VFWXXXXXXXXXXXXXXLSTDPG 1058
+ L+ +PG
Sbjct: 502 IGHRSVPTGGELHASQVLTIEPG 524
>AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical
protein Y45G5AM.2 protein.
Length = 1061
Score = 54.4 bits (125), Expect = 2e-07
Identities = 64/291 (21%), Positives = 112/291 (38%)
Frame = +3
Query: 99 YNPVFFSYLMITQKSVVLFWGDGKLPLTVQEHLNREGVDGFEGAGYTEVVERLECLAKEL 278
YNPV +SYL IT V LF +L + + R+ +D + + + K
Sbjct: 667 YNPVTYSYLFITMSDVRLFIDAKRLNDVSKAYFARQSIDVDDYKAASPYIYDWISATK-- 724
Query: 279 CQSGDGRHSVWLSSDASEAIHRAASGKNVLKKPLELISEVSPVALAKLIKNEVELEGFRN 458
S + +S + + I R + + P S + K IKN +L+G R
Sbjct: 725 --SSFADKKILISPETNYLIGRLIGEDHSMIDP-------SIMERIKKIKNTDQLKGMRA 775
Query: 459 CHVRDGVAVVRFFRWLHDRIDSGDNITEIEAADKLLEFRGDESDFVGPSFETXXXXXXXX 638
++RD +A+V F G TE E A + E + +++G T
Sbjct: 776 SNLRDSIAIVEFLCKFEKERRDGYTFTEYELAADIEEVKTRNREYIGLKQPTIFSAGEHS 835
Query: 639 XXXHYSPSREGEQTVINPGSMFLLDSGGQYRGWNDRYNKDTGI*VENPTDDQKGAFTASP 818
+ P Q ++ F+ +G Y + N I PT++ +T
Sbjct: 836 SVHAHRPD---AQKIVFHYQQFMFQTGSHYT--DGATNCARTIWDSYPTEEFMNQYTLVL 890
Query: 819 QGXR**SAAPYSLRXSXVTCXTVFAXLSLVGTSGLDXAHGXGPRXRPYLNV 971
+G ++A + + + +FA ++L +GLD H G +LN+
Sbjct: 891 KGHIRLASASFPKTLTYGSRLDIFARIAL-WDAGLDYDHETGHSVGHFLNI 940
>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical protein
C49C3.4 protein.
Length = 1566
Score = 30.3 bits (65), Expect = 3.9
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +3
Query: 180 TVQ-EHLNREGVDGFEGAGYTEVVERLECLAKE----LCQSGDGRHSVWLSSDASEAIHR 344
TVQ + LN E V F + Y L+ + L +G ++ V + AIHR
Sbjct: 868 TVQIDFLNPENVTSFANSNYYTTTVNLDAGIENNLILLYDAGPDQNDVLIRMWTPNAIHR 927
Query: 345 AASGKNVLKKPLELISEVS 401
+AS N +PL +++++
Sbjct: 928 SASYVNAKSEPLTPVNKIT 946
>U40953-2|AAB52647.1| 483|Caenorhabditis elegans Hypothetical
protein F53B1.2 protein.
Length = 483
Score = 29.9 bits (64), Expect = 5.1
Identities = 24/84 (28%), Positives = 37/84 (44%)
Frame = +3
Query: 186 QEHLNREGVDGFEGAGYTEVVERLECLAKELCQSGDGRHSVWLSSDASEAIHRAASGKNV 365
Q HL+ G D + E+VE E L L +S DG +V L S E I +
Sbjct: 116 QNHLSISGEDVYTTTRRAEIVEDEETLLDTLAKSSDGTSTVQLIS-REEIIRQVERPDTY 174
Query: 366 LKKPLELISEVSPVALAKLIKNEV 437
K +L+ + +L+ L+ + V
Sbjct: 175 FKSVAKLLIAFAYSSLSFLMTSFV 198
>AC006776-2|AAF60627.1| 172|Caenorhabditis elegans Hypothetical
protein Y46H3C.5 protein.
Length = 172
Score = 29.9 bits (64), Expect = 5.1
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +1
Query: 709 WIPVDSTGDGTTDITRTPAYESKTRLMIRRGLSPRVLKGPDDD 837
WI +D G TT TRT + K R RR + GPDDD
Sbjct: 70 WIGMDRNGSATTSTTRT-TKDRKDRRSSRRRMPNG--SGPDDD 109
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 29.5 bits (63), Expect = 6.8
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 751 TRTPAYESKTRLMIRRGLSPRVLKGPDDDRQRPIP 855
TR PA ++R IRRG PR + D RP P
Sbjct: 55 TRPPARGGRSRSPIRRGSPPRGARADRDRPMRPSP 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,432,040
Number of Sequences: 27780
Number of extensions: 680004
Number of successful extensions: 1638
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1634
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4514820630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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