Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G02_e495_14.seq
         (1532 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    25   1.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   4.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   4.5  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 817 RYITFTRRSSLGQNLPMTEQR 755
           +YIT  R+S L +NL ++E++
Sbjct: 180 KYITIKRKSELAENLGLSERQ 200


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
 Frame = +2

Query: 860  PRGGARYPI-RPIVSRITIHW--PXFYNVXT---WENPGVTNL-IALQHIP-----LSPA 1003
            P G   YPI  P +S++   W  P  Y +     + +P  + L I+   +P      SP 
Sbjct: 168  PAGQYPYPILSPEMSQVAASWHTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYRFSPT 227

Query: 1004 GVIAXRPARSPXP 1042
            G+I   P  SP P
Sbjct: 228  GLIPPHPGLSPHP 240


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 12/73 (16%)
 Frame = +2

Query: 860  PRGGARYPI-RPIVSRITIHW--PXFYNVXT---WENPGVTNL-IALQHIP-----LSPA 1003
            P G   YPI  P +S++   W  P  Y +     + +P  + L I+   +P      SP 
Sbjct: 60   PAGQYPYPILSPEMSQVAASWHTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYRFSPT 119

Query: 1004 GVIAXRPARSPXP 1042
            G+I   P  SP P
Sbjct: 120  GLIPPHPGLSPHP 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,161
Number of Sequences: 336
Number of extensions: 4954
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 46091250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)