Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G02_e495_14.seq
         (1532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   189   6e-48
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   189   6e-48
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023...    32   1.0  
05_06_0240 - 26629218-26629323,26629412-26629490,26629656-266297...    29   9.8  
03_03_0140 + 14771293-14771821,14772343-14772455,14772723-147728...    29   9.8  
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    29   9.8  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  189 bits (460), Expect = 6e-48
 Identities = 85/137 (62%), Positives = 105/137 (76%)
 Frame = +1

Query: 103 DPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 282
           +P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  
Sbjct: 74  NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT 133

Query: 283 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 462
           DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++RG +
Sbjct: 134 DHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTI 193

Query: 463 SRDQRWDVVVDLFFYRD 513
               +WDV+VDLFFYRD
Sbjct: 194 LPGHKWDVMVDLFFYRD 210


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  189 bits (460), Expect = 6e-48
 Identities = 85/137 (62%), Positives = 106/137 (77%)
 Frame = +1

Query: 103 DPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 282
           +P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  
Sbjct: 74  NPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRT 133

Query: 283 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 462
           DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++RG +
Sbjct: 134 DHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTI 193

Query: 463 SRDQRWDVVVDLFFYRD 513
               +WDV+VDLFFYRD
Sbjct: 194 LPGHKWDVMVDLFFYRD 210


>02_05_0938 +
           32901143-32901215,32901841-32901982,32902243-32902314,
           32902573-32902644,32902711-32902782,32902913-32902948,
           32903001-32903072,32903319-32903387,32903483-32903554,
           32903668-32903739,32903838-32903909,32904153-32904224,
           32904470-32904541,32904623-32904694,32904782-32904853,
           32904911-32905003,32905150-32905218,32905315-32905386,
           32905479-32905552,32905643-32905771,32905966-32906331,
           32906584-32906954,32907522-32907890
          Length = 884

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +2

Query: 476 VGMLSLTCSSIVTLKRVRRKSNKLRNRLSSLPKWKRRRQFMRNGLRMLNQLHHGLK 643
           VGM+  T S +  LK +    NKL   +  L  W    Q++R  +  + Q+  GL+
Sbjct: 104 VGMIPSTLSQLPNLKILDLAQNKLNGEIPRLIYWNEVLQYLRLNICNVGQIVRGLR 159


>05_06_0240 - 26629218-26629323,26629412-26629490,26629656-26629761,
            26629844-26629947,26630069-26630168,26630256-26630351,
            26630464-26630541,26630603-26630671,26630766-26630846,
            26630879-26630935,26631016-26631105,26631192-26631278,
            26631690-26631794,26631899-26631994,26632222-26632397,
            26632847-26633006,26633151-26633600
          Length = 679

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = -1

Query: 1052 AXLLXRAIGRAXSLLRQLAKGGCAARRLSW*R 957
            A L   A GR   L RQL++GGC  +RL W R
Sbjct: 85   ASLPGDANGRGLLLARQLSRGGCGEQRL-WAR 115


>03_03_0140 + 14771293-14771821,14772343-14772455,14772723-14772830,
            14772931-14772973,14773454-14773593,14774216-14774446
          Length = 387

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -3

Query: 1077 QFAIRHSGCATVGKGDRAGLFAITPAGERGMCCKAIKLVTPGFS 946
            +FA+   G +T   G RA +FA  P G   +   A+  VTPG S
Sbjct: 62   RFAVIIDGGST---GSRAHVFATGPGGRPDLARSAVMRVTPGLS 102


>02_03_0074 +
           14781763-14784191,14784888-14784978,14785180-14785230,
           14785882-14785947,14786509-14786610
          Length = 912

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 18/59 (30%), Positives = 22/59 (37%)
 Frame = -2

Query: 619 QHSQSIPHELAAALPLWERRQPVP*LVALPSHSLQGHDRRTSQRQHPNAGHD*EHHGVS 443
           QH Q  P     ALP        P  ++  + S   H    SQ Q P + H   HH  S
Sbjct: 120 QHQQQTPQAALQALPPPNSTASSPIPISSIAPSSPRHPHHHSQPQQPQSHHHHHHHSGS 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,847,790
Number of Sequences: 37544
Number of extensions: 620617
Number of successful extensions: 1457
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4930895900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)