Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G02_e495_14.seq
         (1532 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi...   196   2e-50
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi...   189   4e-48
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi...   175   6e-44
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP...    32   0.87 
At2g07020.1 68415.m00803 protein kinase family protein contains ...    30   4.7  
At5g17210.2 68418.m02017 expressed protein                             29   8.1  
At5g17210.1 68418.m02016 expressed protein                             29   8.1  
At1g15530.1 68414.m01868 receptor lectin kinase, putative simila...    29   8.1  

>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
           to laminin receptor-like protein GB:U01955 [Arabidopsis
           thaliana]; identical to cDNA laminin receptor homologue
           GI:16379
          Length = 298

 Score =  196 bits (479), Expect = 2e-50
 Identities = 87/137 (63%), Positives = 108/137 (78%)
 Frame = +1

Query: 103 DPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 282
           +P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q +F EPRLLI+ DP  
Sbjct: 74  NPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRT 133

Query: 283 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 462
           DHQPI E +  NIP+IA C+TDSP+RFVDI IP N K  HSIG ++WLLAR VL++RG +
Sbjct: 134 DHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 193

Query: 463 SRDQRWDVVVDLFFYRD 513
           +  Q+WDV+VDLFFYR+
Sbjct: 194 AAGQKWDVMVDLFFYRE 210


>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 280

 Score =  189 bits (461), Expect = 4e-48
 Identities = 85/137 (62%), Positives = 104/137 (75%)
 Frame = +1

Query: 103 DPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 282
           +P D+ V S+R +GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  
Sbjct: 75  NPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRT 134

Query: 283 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 462
           DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +
Sbjct: 135 DHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194

Query: 463 SRDQRWDVVVDLFFYRD 513
              Q+WDV+VDLFFYR+
Sbjct: 195 LAAQKWDVMVDLFFYRE 211


>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
           to p40 protein homolog GB:AAB67866 [Arabidopsis
           thaliana]; similar to 40S ribosomal protein SA (P40)
           GB:O65751 [Cicer arietinum]
          Length = 332

 Score =  175 bits (426), Expect = 6e-44
 Identities = 79/131 (60%), Positives = 98/131 (74%)
 Frame = +1

Query: 103 DPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQ 282
           +P D+ V S+R +GQRAVLKFA +TG   IAGR TPG FTNQ+Q +F EPRLLI+ DP  
Sbjct: 75  NPKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRT 134

Query: 283 DHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVL 462
           DHQPI E +  NIP IA C+TDSP+ FVDI IP N K  HSIG ++WLLAR VL++RG +
Sbjct: 135 DHQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI 194

Query: 463 SRDQRWDVVVD 495
              Q+WDV+V+
Sbjct: 195 LAAQKWDVMVN 205


>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
           identical to SP|Q9GCB9 Mitochondrial ribosomal protein
           S2 {Arabidopsis thaliana}; contains Pfam profile
           PF00318: ribosomal protein S2
          Length = 219

 Score = 32.3 bits (70), Expect = 0.87
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 250 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 399
           P  ++V D  +    I EAS + IPV+A+ + + PL F + I  P   + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 205 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 306
           TP   TNQ++ A  E     +LDP     PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653


>At5g17210.2 68418.m02017 expressed protein
          Length = 175

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 726 FVLNLTGPVFLCWGCTKCSRSSGCRCCIFSP---*CNWFNILNPFLMNW 589
           F L  T  +FL       S SSGC CC   P     NW   L  F+++W
Sbjct: 21  FNLGFTSALFLMMAQIIVSVSSGCFCCRKGPAPSRSNWIISLICFVVSW 69


>At5g17210.1 68418.m02016 expressed protein
          Length = 209

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 726 FVLNLTGPVFLCWGCTKCSRSSGCRCCIFSP---*CNWFNILNPFLMNW 589
           F L  T  +FL       S SSGC CC   P     NW   L  F+++W
Sbjct: 55  FNLGFTSALFLMMAQIIVSVSSGCFCCRKGPAPSRSNWIISLICFVVSW 103


>At1g15530.1 68414.m01868 receptor lectin kinase, putative similar
           to receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains pfam domains PF00139:
           Legume lectins beta domain and PF00069: Protein kinase
           domain
          Length = 656

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 575 WKRRRQFMRNGLRMLNQLHHG 637
           W+RRRQ + +    LN LHHG
Sbjct: 456 WRRRRQVINDVAEGLNYLHHG 476


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,831,009
Number of Sequences: 28952
Number of extensions: 452560
Number of successful extensions: 1004
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4106040192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)