Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_G01_e487_13.seq
         (1526 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...   113   4e-27
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    25   2.0  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   6.0  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   6.0  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   6.0  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score =  113 bits (271), Expect = 4e-27
 Identities = 53/56 (94%), Positives = 54/56 (96%)
 Frame = +2

Query: 467 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPG 634
           LQDVYKIGGIGTVPVGRVETG+LKPG VVVFAPANITTEVKSVEMHHEAL EAVPG
Sbjct: 1   LQDVYKIGGIGTVPVGRVETGVLKPGMVVVFAPANITTEVKSVEMHHEALPEAVPG 56


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 606 TRLYKKLYPVTMLV 647
           T+LY+KLYPV M +
Sbjct: 28  TKLYQKLYPVLMFL 41


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -2

Query: 223 LKSRLTVWWLSGVHFVYSYNQLLDSECESEQS 128
           L ++ + +W +  +  Y  N  L S+C+  Q+
Sbjct: 3   LSAQFSDYWTNSFYQNYKTNPFLASDCDKNQN 34


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -2

Query: 223 LKSRLTVWWLSGVHFVYSYNQLLDSECESEQS 128
           L ++ + +W +  +  Y  N  L S+C+  Q+
Sbjct: 3   LSAQFSDYWTNSFYQNYKTNPFLASDCDKNQN 34


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -2

Query: 223 LKSRLTVWWLSGVHFVYSYNQLLDSECESEQS 128
           L ++ + +W +  +  Y  N  L S+C+  Q+
Sbjct: 3   LSAQFSDYWTNSFYQNYKTNPFLASDCDKNQN 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 314,694
Number of Sequences: 336
Number of extensions: 6563
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 60
effective length of database: 102,425
effective search space used: 45886400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)