Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_G01_e487_13.seq
(1526 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 278 1e-74
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 83 4e-16
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 55 2e-07
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068) 36 0.065
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.20
SB_13788| Best HMM Match : rve (HMM E-Value=0.00016) 30 5.6
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3) 29 7.4
SB_48617| Best HMM Match : Drf_FH1 (HMM E-Value=3.7) 29 9.8
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066) 29 9.8
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.8
SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.8
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 278 bits (681), Expect = 1e-74
Identities = 129/185 (69%), Positives = 149/185 (80%), Gaps = 6/185 (3%)
Frame = +2
Query: 317 NMLEPSTKMPWFKGWLVER------KEGKAEGKCLIEALDAILPPARPTDKALRLPLQDV 478
NM+ +++MPWFK W +ER KE A G L E LD+ILPP+RP+ LRLPLQDV
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112
Query: 479 YKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVK 658
YKIGGIGTVPVGRVETG+LKPGTVV F+P+NITTEVKSVEMHHE+L EA+PGDNVGFNVK
Sbjct: 113 YKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVEMHHESLAEALPGDNVGFNVK 172
Query: 659 NVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACNLP 838
NVSVK+++RG VAGD KNNPP+ FTAQVIV+NHPG+I GY+PVLDCHTAHIAC
Sbjct: 173 NVSVKDIKRGNVAGDFKNNPPKPCKSFTAQVIVMNHPGEIHAGYSPVLDCHTAHIACKFD 232
Query: 839 KSKRK 853
K K
Sbjct: 233 KLLEK 237
Score = 54.4 bits (125), Expect = 2e-07
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Frame = +1
Query: 811 HSPH-SLQFAEIKEKVDRRTGKSTEDXLKSIKSGDAXIVNLVXFQPLCVXSXQXFHP 978
H+ H + +F ++ EK+DRR+GK ED K IK+GDA +V ++ +P+CV + F P
Sbjct: 223 HTAHIACKFDKLLEKIDRRSGKKLEDNPKMIKTGDAAMVEMIPSKPMCVETFTEFPP 279
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 83.4 bits (197), Expect = 4e-16
Identities = 35/66 (53%), Positives = 50/66 (75%)
Frame = +2
Query: 77 EGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIK 256
+GEFE G + GQTREHA+LA T GVK L++ VNKMD ++E R+EEIK +++ ++K
Sbjct: 257 KGEFETGFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLK 316
Query: 257 KIGYNP 274
K+G+NP
Sbjct: 317 KVGFNP 322
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 54.8 bits (126), Expect = 2e-07
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = +2
Query: 80 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 187
GEFEAG GQTREHA+L +LGV QLIV +NK+D
Sbjct: 49 GEFEAGFESGGQTREHAILVRSLGVTQLIVAINKLD 84
>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
Length = 173
Score = 36.3 bits (80), Expect = 0.065
Identities = 19/69 (27%), Positives = 33/69 (47%)
Frame = +2
Query: 431 PARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHE 610
P R T +L + + I G GT+ G + +G + V +T +VKS++M +
Sbjct: 104 PERTTSGSLLFAVDHCFSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKK 163
Query: 611 ALQEAVPGD 637
+ +A GD
Sbjct: 164 PVDKASQGD 172
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 34.7 bits (76), Expect = 0.20
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Frame = +2
Query: 500 TVPVGRVETGILKPGTVVVFAPANI----TTEVKSVEMHHEALQEAVPGDNVGFNVKNVS 667
T+ V GIL G +V P T + S++ + + G + + +
Sbjct: 329 TLASADVRRGILHEGDTLVVGPLCSGHFQTVRILSLKRNRAPCRVVRAGQSASAALSGIE 388
Query: 668 VKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGY 790
ELRRG V D P R F A V +L HP IS +
Sbjct: 389 RHELRRGMVMTDPSLEP-RACMCFWADVYLLFHPAAISKRF 428
>SB_13788| Best HMM Match : rve (HMM E-Value=0.00016)
Length = 508
Score = 29.9 bits (64), Expect = 5.6
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 615 YKKLYPVTMLVSTSKTYLSRNCAVVTLQEIRKTTHPGELQTSQRKSLC*ITQVKYQTDTH 794
++ L+ VT+ VST T LS T++ R TH Q+S+ S C +Q + Q D
Sbjct: 19 FQDLFSVTLEVSTL-TALSAYYEGATVERRRAHTH----QSSENLSCCRRSQEECQVDER 73
Query: 795 LYW 803
L W
Sbjct: 74 LIW 76
>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
Length = 447
Score = 29.5 bits (63), Expect = 7.4
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = -3
Query: 672 LTDTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPI 493
+T +T+ + + T+ +TD+TS+ M+ TT + + ++T T I
Sbjct: 124 ITSITMTITTSTTDITSKTMIITTSTTDITSITMIITTSTTDITSITMIITTSTTDITSI 183
Query: 492 PPILYTS 472
I+ TS
Sbjct: 184 TMIITTS 190
Score = 29.1 bits (62), Expect = 9.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 597 STDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTS 472
+TD+TS+ M+ TT + + ++T T + I I+ T+
Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275
>SB_48617| Best HMM Match : Drf_FH1 (HMM E-Value=3.7)
Length = 477
Score = 29.1 bits (62), Expect = 9.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 799 IGLPHSPHSLQFAEIKEKVDRRTGKSTEDXLKSIKSGDAXI 921
+G P S + ++ +K VDR + +T+D +K + + DA +
Sbjct: 412 LGKPLSTNDVKDKSLKTVVDRLSSAATDDEVKEVTTSDAVL 452
>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
Length = 177
Score = 29.1 bits (62), Expect = 9.8
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +2
Query: 467 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANI----TTEVKSVEMHHEALQEAVPG 634
+ D Y + G+GTV G GI++ ++ P + ++S+ ++E G
Sbjct: 109 IDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGPDPLGQFQPVAIRSIHRKRMPVKEVRGG 168
Query: 635 DNVGFNVK 658
F++K
Sbjct: 169 QTASFSLK 176
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 29.1 bits (62), Expect = 9.8
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Frame = +2
Query: 188 STEPPYSESRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 328
ST S+ FE KK +S+ K +P+ + FVP WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113
>SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 29.1 bits (62), Expect = 9.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 766 PRSNIKRIHTCIGLPHSPHSLQFAEIKEKVDRRTGKSTEDXLKSIKSGDA 915
P + K +H+ + H +Q EI +RR S KS++SGD+
Sbjct: 259 PSAIEKSVHSAVVTFEDYHEIQPCEIPRLKERRMSDSATQTGKSLQSGDS 308
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,313,078
Number of Sequences: 59808
Number of extensions: 881442
Number of successful extensions: 2329
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2310
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4965079671
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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