Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_G01_e487_13.seq
(1526 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 436 e-122
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 436 e-122
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 384 e-107
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 134 2e-31
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 106 5e-23
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 106 5e-23
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 69 1e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 69 1e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 69 1e-11
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 60 4e-09
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 59 9e-09
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 59 9e-09
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 58 2e-08
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 58 2e-08
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 44 4e-04
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 38 0.014
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 36 0.10
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 31 2.2
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 31 2.8
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 31 2.8
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 30 3.8
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 30 3.8
AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set (trithora... 30 3.8
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 30 5.0
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 30 5.0
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 30 5.0
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 29 6.6
U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 29 8.7
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 436 bits (1074), Expect = e-122
Identities = 203/258 (78%), Positives = 223/258 (86%)
Frame = +2
Query: 80 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 259
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE+RF EI EVS +IKK
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 260 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPAR 439
IGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP R
Sbjct: 181 IGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQR 240
Query: 440 PTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQ 619
PTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKSVEMHHE+L
Sbjct: 241 PTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLP 300
Query: 620 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPV 799
EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPV
Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPV 360
Query: 800 LDCHTAHIACNLPKSKRK 853
LDCHTAHIAC + K K
Sbjct: 361 LDCHTAHIACKFNELKEK 378
Score = 64.5 bits (150), Expect = 2e-10
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Frame = +1
Query: 694 CRRFEKQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPH-SLQFAEIKEKVDRRTG 870
C ++ P + + H+ P I +T + H+ H + +F E+KEKVDRRTG
Sbjct: 326 CSDSKQDPAKEARTFHAQVIIMNHP-GQISNGYTPVLDCHTAHIACKFNELKEKVDRRTG 384
Query: 871 KSTEDXLKSIKSGDAXIVNLVXFQPLCVXSXQXFHPXVVSPCVNEANXXVGV*XLXTSXS 1050
K ED K +KSGDA IV L+ +PLCV S + P + V + V V + +
Sbjct: 385 KKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAP-LGRFAVRDMRQTVAVGVIKSVEK 443
Query: 1051 RXGKSPSCRKS 1083
G S KS
Sbjct: 444 SDGSSGKVTKS 454
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 436 bits (1074), Expect = e-122
Identities = 203/258 (78%), Positives = 223/258 (86%)
Frame = +2
Query: 80 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 259
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE+RF EI EVS +IKK
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180
Query: 260 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPAR 439
IGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP R
Sbjct: 181 IGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQR 240
Query: 440 PTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQ 619
PTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKSVEMHHE+L
Sbjct: 241 PTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLP 300
Query: 620 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPV 799
EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPV
Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPV 360
Query: 800 LDCHTAHIACNLPKSKRK 853
LDCHTAHIAC + K K
Sbjct: 361 LDCHTAHIACKFNELKEK 378
Score = 64.5 bits (150), Expect = 2e-10
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Frame = +1
Query: 694 CRRFEKQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPH-SLQFAEIKEKVDRRTG 870
C ++ P + + H+ P I +T + H+ H + +F E+KEKVDRRTG
Sbjct: 326 CSDSKQDPAKEARTFHAQVIIMNHP-GQISNGYTPVLDCHTAHIACKFNELKEKVDRRTG 384
Query: 871 KSTEDXLKSIKSGDAXIVNLVXFQPLCVXSXQXFHPXVVSPCVNEANXXVGV*XLXTSXS 1050
K ED K +KSGDA IV L+ +PLCV S + P + V + V V + +
Sbjct: 385 KKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAP-LGRFAVRDMRQTVAVGVIKSVEK 443
Query: 1051 RXGKSPSCRKS 1083
G S KS
Sbjct: 444 SDGSSGKVTKS 454
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 384 bits (946), Expect = e-107
Identities = 176/231 (76%), Positives = 197/231 (85%)
Frame = +2
Query: 161 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 340
L+V NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 341 MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRV 520
MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRV
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRV 233
Query: 521 ETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 700
ETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V
Sbjct: 234 ETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCS 293
Query: 701 DSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACNLPKSKRK 853
DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIAC + K K
Sbjct: 294 DSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEK 344
Score = 64.5 bits (150), Expect = 2e-10
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Frame = +1
Query: 694 CRRFEKQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPH-SLQFAEIKEKVDRRTG 870
C ++ P + + H+ P I +T + H+ H + +F E+KEKVDRRTG
Sbjct: 292 CSDSKQDPAKEARTFHAQVIIMNHP-GQISNGYTPVLDCHTAHIACKFNELKEKVDRRTG 350
Query: 871 KSTEDXLKSIKSGDAXIVNLVXFQPLCVXSXQXFHPXVVSPCVNEANXXVGV*XLXTSXS 1050
K ED K +KSGDA IV L+ +PLCV S + P + V + V V + +
Sbjct: 351 KKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAP-LGRFAVRDMRQTVAVGVIKSVEK 409
Query: 1051 RXGKSPSCRKS 1083
G S KS
Sbjct: 410 SDGSSGKVTKS 420
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 134 bits (323), Expect = 2e-31
Identities = 80/248 (32%), Positives = 130/248 (52%), Gaps = 2/248 (0%)
Frame = +2
Query: 80 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 259
GEFE G + GQTREH++L T GVK L++ VNKMD + E RF+EI+ +++ +++K
Sbjct: 223 GEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRK 282
Query: 260 IGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPP- 433
+G+NP + +VP SG G + + T W G C IE +D +LP
Sbjct: 283 LGFNPKTDITYVPCSGLTGAFIKDRPTGSE--GNWY--------SGPCFIEFIDVLLPSY 332
Query: 434 ARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEA 613
R + +R + + Y +GTV +G++E+G ++ G +V P +V +
Sbjct: 333 KRDFNGPVRCTVAEKY--SEMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVE 390
Query: 614 LQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYT 793
+ V GDN+ F +K + EL+ G++ + G F A+V+VL H I++GY+
Sbjct: 391 TERVVAGDNIKFKLKGIEENELQGGFIICSPDSLAKTGRV-FDAEVLVLEHRSIIASGYS 449
Query: 794 PVLDCHTA 817
VL +A
Sbjct: 450 CVLHIQSA 457
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 106 bits (254), Expect = 5e-23
Identities = 70/252 (27%), Positives = 129/252 (51%), Gaps = 2/252 (0%)
Frame = +2
Query: 80 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI-K 256
GEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ +
Sbjct: 284 GEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTR 341
Query: 257 KIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPA 436
+ G++ FVP+SG+ G+N+++ ++ W+ +G CL+E +D+ + P
Sbjct: 342 QAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQ 386
Query: 437 RPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEAL 616
P+D LR+ + DV K+ V G++E+G ++ V+ +++T +++
Sbjct: 387 PPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANNDGS 445
Query: 617 QEAVPGDNVGFNVKNVSVKE-LRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYT 793
+ GD + ++ E ++ G V + + + F +++ I G
Sbjct: 446 RHCFAGDYILLTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAK 505
Query: 794 PVLDCHTAHIAC 829
L H+ + C
Sbjct: 506 AELYAHSLCVPC 517
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical protein
K07A12.4a protein.
Length = 610
Score = 106 bits (254), Expect = 5e-23
Identities = 70/252 (27%), Positives = 129/252 (51%), Gaps = 2/252 (0%)
Frame = +2
Query: 80 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI-K 256
GEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ +
Sbjct: 302 GEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTR 359
Query: 257 KIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPA 436
+ G++ FVP+SG+ G+N+++ ++ W+ +G CL+E +D+ + P
Sbjct: 360 QAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQ 404
Query: 437 RPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEAL 616
P+D LR+ + DV K+ V G++E+G ++ V+ +++T +++
Sbjct: 405 PPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANNDGS 463
Query: 617 QEAVPGDNVGFNVKNVSVKE-LRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYT 793
+ GD + ++ E ++ G V + + + F +++ I G
Sbjct: 464 RHCFAGDYILLTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAK 523
Query: 794 PVLDCHTAHIAC 829
L H+ + C
Sbjct: 524 AELYAHSLCVPC 535
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 68.5 bits (160), Expect = 1e-11
Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 8/202 (3%)
Frame = +2
Query: 113 QTREHALLAFTLGVK--QLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVA 286
QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY P
Sbjct: 152 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY-PGDTC 207
Query: 287 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALD-AILPPARPTDKALRL 463
P+ G + K P + G+ K L+E LD + P R ++
Sbjct: 208 --PVI--FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPMF 254
Query: 464 PLQDVYKIGGIGTVPVGRVETGILKPG-TVVVFAPANITTEVKSV----EMHHEALQEAV 628
+ VY I G GTV G++E GILK G + + T VKSV E + + +A
Sbjct: 255 AAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAE 314
Query: 629 PGDNVGFNVKNVSVKELRRGYV 694
PGD +G ++ + K++RRG V
Sbjct: 315 PGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 68.5 bits (160), Expect = 1e-11
Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 8/202 (3%)
Frame = +2
Query: 113 QTREHALLAFTLGVK--QLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVA 286
QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY P
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY-PGDTC 208
Query: 287 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALD-AILPPARPTDKALRL 463
P+ G + K P + G+ K L+E LD + P R ++
Sbjct: 209 --PVI--FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPMF 255
Query: 464 PLQDVYKIGGIGTVPVGRVETGILKPG-TVVVFAPANITTEVKSV----EMHHEALQEAV 628
+ VY I G GTV G++E GILK G + + T VKSV E + + +A
Sbjct: 256 AAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAE 315
Query: 629 PGDNVGFNVKNVSVKELRRGYV 694
PGD +G ++ + K++RRG V
Sbjct: 316 PGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 68.5 bits (160), Expect = 1e-11
Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 8/202 (3%)
Frame = +2
Query: 113 QTREHALLAFTLGVK--QLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVA 286
QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY P
Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY-PGDTC 208
Query: 287 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALD-AILPPARPTDKALRL 463
P+ G + K P + G+ K L+E LD + P R ++
Sbjct: 209 --PVI--FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPMF 255
Query: 464 PLQDVYKIGGIGTVPVGRVETGILKPG-TVVVFAPANITTEVKSV----EMHHEALQEAV 628
+ VY I G GTV G++E GILK G + + T VKSV E + + +A
Sbjct: 256 AAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAE 315
Query: 629 PGDNVGFNVKNVSVKELRRGYV 694
PGD +G ++ + K++RRG V
Sbjct: 316 PGDQLGVLLRGLGPKDVRRGCV 337
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 60.1 bits (139), Expect = 4e-09
Identities = 33/52 (63%), Positives = 37/52 (71%)
Frame = +2
Query: 80 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKK 235
GEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R + I++
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTIQR 169
Score = 53.6 bits (123), Expect = 4e-07
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +3
Query: 225 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVNA 401
+S +S +SR+ TI RL LS TE TC P CHGSRDG L+ +KE L
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETLPERP 210
Query: 402 LLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLE 500
R TPS A LT SVF + T+S LE
Sbjct: 211 SSRLLTPSSHHNAQLTDHSVFHSRMCTRSEELE 243
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 58.8 bits (136), Expect = 9e-09
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 5/201 (2%)
Frame = +2
Query: 113 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFV 292
QT+EH +LA +GVK + + +NK D E E + ++ E + G+N
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFN------- 196
Query: 293 PISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKC---LIEALDAILPPARPTDKALRL 463
GD P +G + EG+ + C LI+ALD++ P R +
Sbjct: 197 ------GD-------ATPVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVM 242
Query: 464 PLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA--PANITTEVKSVEMHHEALQEAVPGD 637
P+ I G GTV VG +E G+LK G V + T +++ ++++E GD
Sbjct: 243 PIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGD 302
Query: 638 NVGFNVKNVSVKELRRGYVAG 700
+ G + V ++RG AG
Sbjct: 303 HCGVLCRGVKGDTVKRGMWAG 323
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 58.8 bits (136), Expect = 9e-09
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 5/201 (2%)
Frame = +2
Query: 113 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFV 292
QT+EH +LA +GVK + + +NK D E E + ++ E + G+N
Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFN------- 196
Query: 293 PISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKC---LIEALDAILPPARPTDKALRL 463
GD P +G + EG+ + C LI+ALD++ P R +
Sbjct: 197 ------GD-------ATPVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVM 242
Query: 464 PLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA--PANITTEVKSVEMHHEALQEAVPGD 637
P+ I G GTV VG +E G+LK G V + T +++ ++++E GD
Sbjct: 243 PIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGD 302
Query: 638 NVGFNVKNVSVKELRRGYVAG 700
+ G + V ++RG AG
Sbjct: 303 HCGVLCRGVKGDTVKRGMWAG 323
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 58.0 bits (134), Expect = 2e-08
Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 7/238 (2%)
Frame = +2
Query: 110 GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAF 289
G T+EH LA +L V +V V K+D P Y EE K ++ ++ P V
Sbjct: 268 GTTKEHLSLALSLHVPVYLV-VTKIDMC-PAYI---LEETMKNITRLVRSAKKLPILVRN 322
Query: 290 VPISGWHGDNMLEPSTKM-PWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDK--ALR 460
+ N PS K+ P F+ V EG L+ ++P R ++
Sbjct: 323 MDDCVHAAVNF--PSKKVCPIFQ---VSNVEGT--NLPLLRQFLNMVPLRRQLNENDPAH 375
Query: 461 LPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAV 628
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ +
Sbjct: 376 FQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVGIVK 435
Query: 629 PGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 802
G + F +K + K++R+G V D K P F A+++VL+HP I Y +L
Sbjct: 436 CGQSASFALKKIPKKDVRQGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML 492
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 58.0 bits (134), Expect = 2e-08
Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 7/238 (2%)
Frame = +2
Query: 110 GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAF 289
G T+EH LA +L V +V V K+D E + I + V S KK+
Sbjct: 267 GTTKEHLSLALSLHVPVYLV-VTKIDMCPANILEETMKNITRLVRS-AKKL--------- 315
Query: 290 VPISGWHGDNMLEPSTKMPWFKGW-LVERKEGKAEGKCLIEALDAILPPARPTDK--ALR 460
PI + D+++ + P K + + + L+ I+P R ++
Sbjct: 316 -PILVRNMDDVVHAAVNFPSKKVCPIFQVSNVEGTNLPLLRQFLNIVPLRRQLNENDPAH 374
Query: 461 LPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAV 628
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ +
Sbjct: 375 FQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVK 434
Query: 629 PGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 802
G + F +K + K++R+G V D K P F A+++VL+HP I Y +L
Sbjct: 435 CGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML 491
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 43.6 bits (98), Expect = 4e-04
Identities = 48/181 (26%), Positives = 77/181 (42%)
Frame = +2
Query: 113 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFV 292
QT EH LLA ++I+ +NK D E +S+ E K+V +K +G + +
Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENS---- 163
Query: 293 PISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQ 472
PI +E S +FK +++ K IE+ I P R + + +
Sbjct: 164 PI--------VEMSLADGYFKEEMLQNL------KLAIES--RIFEPKRDEEGEFLIAID 207
Query: 473 DVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFN 652
+ I G GTV G V G+L+ T + F N VK++E + + + G F
Sbjct: 208 HCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFL 267
Query: 653 V 655
V
Sbjct: 268 V 268
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 38.3 bits (85), Expect = 0.014
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +2
Query: 467 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITT----EVKSVEMHHEALQEAVPG 634
++++Y + +G V G + G L G V+ P T V S+ +A+ PG
Sbjct: 407 IEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPG 466
Query: 635 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 766
+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 467 EAASISLNLPDGVSLRRGMVLAEIDHQPP-VCYEFTANLLLLCH 509
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 35.5 bits (78), Expect = 0.10
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +2
Query: 422 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEM 601
I P R + + + + I G GTV G V G+L+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 602 HHEALQEAVPGDNVGFNV 655
+ + + G F V
Sbjct: 210 WKQRVGQVAAGARAAFLV 227
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 31.1 bits (67), Expect = 2.2
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Frame = -3
Query: 759 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPG-TASCRASWCISTDLT 583
ST T A+ + P ++ P + T +S + S R S +S D T
Sbjct: 4 STATVAIIQSEPSTSSSSSPSSSRPEDGATVGNTFTQSSAVSESQSTSERTSRSVSPDST 63
Query: 582 SVVMLAGAKTTTVPGFR--IPVSTLPTGTVPIPPILY 478
V + +TVP + VST PT +PPI Y
Sbjct: 64 PVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 30.7 bits (66), Expect = 2.8
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 630 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 481
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 546 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 593
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 30.7 bits (66), Expect = 2.8
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 630 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 481
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 643 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 690
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 30.3 bits (65), Expect = 3.8
Identities = 23/81 (28%), Positives = 32/81 (39%)
Frame = -3
Query: 750 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVM 571
T A +AAP GGLF + T P T T +P TA+ + T +
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527
Query: 570 LAGAKTTTVPGFRIPVSTLPT 508
+ T+T+P P PT
Sbjct: 528 TTTSTTSTLPK---PAEATPT 545
Score = 29.5 bits (63), Expect = 6.6
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = -3
Query: 759 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS--WCISTDL 586
++ T S AP GGLF + T P + T T +P T +T
Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTT 506
Query: 585 TSVVMLAGAKTTTVPGF-RIPVSTLPTGTVPIP 490
+ G +TV +P +T T T+P P
Sbjct: 507 PATAATLGQTPSTVSATPSLPTTTSTTSTLPKP 539
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 30.3 bits (65), Expect = 3.8
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 702 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 544
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAXSSMYTWPQTY 163
Query: 543 PGFRIP 526
PG+ P
Sbjct: 164 PGYLPP 169
>AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 27
protein.
Length = 502
Score = 30.3 bits (65), Expect = 3.8
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = -2
Query: 505 YCSNTADFVYVLQGKTESLV-SGASRRKDGVEGLNKAFTFSLSFFTLN-QPSLEPWHFGG 332
Y + + F Y L ++ + A RRKD + +++ F N P L W G
Sbjct: 207 YRTISRQFCYFLLAIAKNKIYEAAQRRKDARNAMETPIFYNVPFNVANFTPKLYFWAVGV 266
Query: 331 RLQHVISVPARNGYESDGSRIV 266
V VP+ N DG+ ++
Sbjct: 267 VTTRVNMVPSENQVGEDGNPVI 288
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 5.0
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 702 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 544
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 543 PGFRIP 526
PG+ P
Sbjct: 164 PGYLPP 169
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.9 bits (64), Expect = 5.0
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 702 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 544
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 543 PGFRIP 526
PG+ P
Sbjct: 164 PGYLPP 169
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 29.9 bits (64), Expect = 5.0
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Frame = -3
Query: 702 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 544
+P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T
Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163
Query: 543 PGFRIP 526
PG+ P
Sbjct: 164 PGYLPP 169
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.5 bits (63), Expect = 6.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 536 KPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 661
KPGT+ F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.8 protein.
Length = 346
Score = 29.1 bits (62), Expect = 8.7
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -3
Query: 618 CRASWCISTDLTSVVMLAGAKTTTV----PGFRIPVSTLPTGTVP 496
CR CI+T +T + + V PG+ +STLPT +P
Sbjct: 55 CRMEKCIATGMTMCKVQGNREKNKVRGYYPGYLPVISTLPTSVIP 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,689,225
Number of Sequences: 27780
Number of extensions: 651353
Number of successful extensions: 1921
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1903
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4390273854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -