BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 030725E6_G01_e487_13.seq (1526 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 436 e-122 U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 436 e-122 U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 384 e-107 Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 134 2e-31 Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 106 5e-23 Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 106 5e-23 D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 69 1e-11 D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 69 1e-11 AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 69 1e-11 U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 60 4e-09 U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 59 9e-09 AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 59 9e-09 L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 58 2e-08 AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 58 2e-08 Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 44 4e-04 Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 38 0.014 Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 36 0.10 Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 31 2.2 U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 31 2.8 U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 31 2.8 U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 30 3.8 U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 30 3.8 AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set (trithora... 30 3.8 Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 30 5.0 Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 30 5.0 U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 30 5.0 AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 29 6.6 U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 29 8.7 >U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor protein 4, isoforma protein. Length = 463 Score = 436 bits (1074), Expect = e-122 Identities = 203/258 (78%), Positives = 223/258 (86%) Frame = +2 Query: 80 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 259 GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE+RF EI EVS +IKK Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180 Query: 260 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPAR 439 IGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP R Sbjct: 181 IGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQR 240 Query: 440 PTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQ 619 PTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKSVEMHHE+L Sbjct: 241 PTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLP 300 Query: 620 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPV 799 EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPV Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPV 360 Query: 800 LDCHTAHIACNLPKSKRK 853 LDCHTAHIAC + K K Sbjct: 361 LDCHTAHIACKFNELKEK 378 Score = 64.5 bits (150), Expect = 2e-10 Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Frame = +1 Query: 694 CRRFEKQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPH-SLQFAEIKEKVDRRTG 870 C ++ P + + H+ P I +T + H+ H + +F E+KEKVDRRTG Sbjct: 326 CSDSKQDPAKEARTFHAQVIIMNHP-GQISNGYTPVLDCHTAHIACKFNELKEKVDRRTG 384 Query: 871 KSTEDXLKSIKSGDAXIVNLVXFQPLCVXSXQXFHPXVVSPCVNEANXXVGV*XLXTSXS 1050 K ED K +KSGDA IV L+ +PLCV S + P + V + V V + + Sbjct: 385 KKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAP-LGRFAVRDMRQTVAVGVIKSVEK 443 Query: 1051 RXGKSPSCRKS 1083 G S KS Sbjct: 444 SDGSSGKVTKS 454 >U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor protein 3 protein. Length = 463 Score = 436 bits (1074), Expect = e-122 Identities = 203/258 (78%), Positives = 223/258 (86%) Frame = +2 Query: 80 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 259 GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE+RF EI EVS +IKK Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKK 180 Query: 260 IGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPAR 439 IGYNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP R Sbjct: 181 IGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQR 240 Query: 440 PTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQ 619 PTD+ LRLPLQDVYKIGGIGTVPVGRVETGI+KPG VV FAP N+TTEVKSVEMHHE+L Sbjct: 241 PTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLP 300 Query: 620 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPV 799 EAVPGDNVGFNVKNVSVK++RRG V DSK +P + A F AQVI++NHPGQISNGYTPV Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPV 360 Query: 800 LDCHTAHIACNLPKSKRK 853 LDCHTAHIAC + K K Sbjct: 361 LDCHTAHIACKFNELKEK 378 Score = 64.5 bits (150), Expect = 2e-10 Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Frame = +1 Query: 694 CRRFEKQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPH-SLQFAEIKEKVDRRTG 870 C ++ P + + H+ P I +T + H+ H + +F E+KEKVDRRTG Sbjct: 326 CSDSKQDPAKEARTFHAQVIIMNHP-GQISNGYTPVLDCHTAHIACKFNELKEKVDRRTG 384 Query: 871 KSTEDXLKSIKSGDAXIVNLVXFQPLCVXSXQXFHPXVVSPCVNEANXXVGV*XLXTSXS 1050 K ED K +KSGDA IV L+ +PLCV S + P + V + V V + + Sbjct: 385 KKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAP-LGRFAVRDMRQTVAVGVIKSVEK 443 Query: 1051 RXGKSPSCRKS 1083 G S KS Sbjct: 444 SDGSSGKVTKS 454 >U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor protein 4, isoformd protein. Length = 429 Score = 384 bits (946), Expect = e-107 Identities = 176/231 (76%), Positives = 197/231 (85%) Frame = +2 Query: 161 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 340 L+V NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173 Query: 341 MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRV 520 MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRV Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRV 233 Query: 521 ETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAG 700 ETGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V Sbjct: 234 ETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCS 293 Query: 701 DSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACNLPKSKRK 853 DSK +P + A F AQVI++NHPGQISNGYTPVLDCHTAHIAC + K K Sbjct: 294 DSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEK 344 Score = 64.5 bits (150), Expect = 2e-10 Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 1/131 (0%) Frame = +1 Query: 694 CRRFEKQPTQGSCRLHSASHCAKSPRSNIKRIHTCIGLPHSPH-SLQFAEIKEKVDRRTG 870 C ++ P + + H+ P I +T + H+ H + +F E+KEKVDRRTG Sbjct: 292 CSDSKQDPAKEARTFHAQVIIMNHP-GQISNGYTPVLDCHTAHIACKFNELKEKVDRRTG 350 Query: 871 KSTEDXLKSIKSGDAXIVNLVXFQPLCVXSXQXFHPXVVSPCVNEANXXVGV*XLXTSXS 1050 K ED K +KSGDA IV L+ +PLCV S + P + V + V V + + Sbjct: 351 KKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAP-LGRFAVRDMRQTVAVGVIKSVEK 409 Query: 1051 RXGKSPSCRKS 1083 G S KS Sbjct: 410 SDGSSGKVTKS 420 >Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical protein H19N07.1 protein. Length = 532 Score = 134 bits (323), Expect = 2e-31 Identities = 80/248 (32%), Positives = 130/248 (52%), Gaps = 2/248 (0%) Frame = +2 Query: 80 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 259 GEFE G + GQTREH++L T GVK L++ VNKMD + E RF+EI+ +++ +++K Sbjct: 223 GEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRK 282 Query: 260 IGYNPAA-VAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPP- 433 +G+NP + +VP SG G + + T W G C IE +D +LP Sbjct: 283 LGFNPKTDITYVPCSGLTGAFIKDRPTGSE--GNWY--------SGPCFIEFIDVLLPSY 332 Query: 434 ARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEA 613 R + +R + + Y +GTV +G++E+G ++ G +V P +V + Sbjct: 333 KRDFNGPVRCTVAEKY--SEMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVE 390 Query: 614 LQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYT 793 + V GDN+ F +K + EL+ G++ + G F A+V+VL H I++GY+ Sbjct: 391 TERVVAGDNIKFKLKGIEENELQGGFIICSPDSLAKTGRV-FDAEVLVLEHRSIIASGYS 449 Query: 794 PVLDCHTA 817 VL +A Sbjct: 450 CVLHIQSA 457 >Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical protein K07A12.4b protein. Length = 592 Score = 106 bits (254), Expect = 5e-23 Identities = 70/252 (27%), Positives = 129/252 (51%), Gaps = 2/252 (0%) Frame = +2 Query: 80 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI-K 256 GEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ + Sbjct: 284 GEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTR 341 Query: 257 KIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPA 436 + G++ FVP+SG+ G+N+++ ++ W+ +G CL+E +D+ + P Sbjct: 342 QAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQ 386 Query: 437 RPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEAL 616 P+D LR+ + DV K+ V G++E+G ++ V+ +++T +++ Sbjct: 387 PPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANNDGS 445 Query: 617 QEAVPGDNVGFNVKNVSVKE-LRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYT 793 + GD + ++ E ++ G V + + + F +++ I G Sbjct: 446 RHCFAGDYILLTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAK 505 Query: 794 PVLDCHTAHIAC 829 L H+ + C Sbjct: 506 AELYAHSLCVPC 517 >Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical protein K07A12.4a protein. Length = 610 Score = 106 bits (254), Expect = 5e-23 Identities = 70/252 (27%), Positives = 129/252 (51%), Gaps = 2/252 (0%) Frame = +2 Query: 80 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI-K 256 GEFE G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ + Sbjct: 302 GEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTR 359 Query: 257 KIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPA 436 + G++ FVP+SG+ G+N+++ ++ W+ +G CL+E +D+ + P Sbjct: 360 QAGFSKP--KFVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQ 404 Query: 437 RPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEAL 616 P+D LR+ + DV K+ V G++E+G ++ V+ +++T +++ Sbjct: 405 PPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANNDGS 463 Query: 617 QEAVPGDNVGFNVKNVSVKE-LRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYT 793 + GD + ++ E ++ G V + + + F +++ I G Sbjct: 464 RHCFAGDYILLTLQGTFEPESIQTGSVVVRAGPDTLIPSKKFEVRLVAFEIAMPIIKGAK 523 Query: 794 PVLDCHTAHIAC 829 L H+ + C Sbjct: 524 AELYAHSLCVPC 535 >D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor Tu homologueprecursor protein. Length = 495 Score = 68.5 bits (160), Expect = 1e-11 Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 8/202 (3%) Frame = +2 Query: 113 QTREHALLAFTLGVK--QLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVA 286 QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY P Sbjct: 152 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY-PGDTC 207 Query: 287 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALD-AILPPARPTDKALRL 463 P+ G + K P + G+ K L+E LD + P R ++ Sbjct: 208 --PVI--FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPMF 254 Query: 464 PLQDVYKIGGIGTVPVGRVETGILKPG-TVVVFAPANITTEVKSV----EMHHEALQEAV 628 + VY I G GTV G++E GILK G + + T VKSV E + + +A Sbjct: 255 AAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAE 314 Query: 629 PGDNVGFNVKNVSVKELRRGYV 694 PGD +G ++ + K++RRG V Sbjct: 315 PGDQLGVLLRGLGPKDVRRGCV 336 >D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor Tu homologueprecursor protein. Length = 496 Score = 68.5 bits (160), Expect = 1e-11 Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 8/202 (3%) Frame = +2 Query: 113 QTREHALLAFTLGVK--QLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVA 286 QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY P Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY-PGDTC 208 Query: 287 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALD-AILPPARPTDKALRL 463 P+ G + K P + G+ K L+E LD + P R ++ Sbjct: 209 --PVI--FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPMF 255 Query: 464 PLQDVYKIGGIGTVPVGRVETGILKPG-TVVVFAPANITTEVKSV----EMHHEALQEAV 628 + VY I G GTV G++E GILK G + + T VKSV E + + +A Sbjct: 256 AAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAE 315 Query: 629 PGDNVGFNVKNVSVKELRRGYV 694 PGD +G ++ + K++RRG V Sbjct: 316 PGDQLGVLLRGLGPKDVRRGCV 337 >AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation factor (ef-tu), mitochondrialprotein 1 protein. Length = 496 Score = 68.5 bits (160), Expect = 1e-11 Identities = 64/202 (31%), Positives = 99/202 (49%), Gaps = 8/202 (3%) Frame = +2 Query: 113 QTREHALLAFTLGVK--QLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVA 286 QTREH LLA +GV ++V +NK+D E P +E+R E ++ ++ + + GY P Sbjct: 153 QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY-PGDTC 208 Query: 287 FVPISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALD-AILPPARPTDKALRL 463 P+ G + K P + G+ K L+E LD + P R ++ Sbjct: 209 --PVI--FGSALCALEGKQP---------EIGEEAVKQLLEVLDNKFVIPERKVNEEPMF 255 Query: 464 PLQDVYKIGGIGTVPVGRVETGILKPG-TVVVFAPANITTEVKSV----EMHHEALQEAV 628 + VY I G GTV G++E GILK G + + T VKSV E + + +A Sbjct: 256 AAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVKSVISGLESFRKTVDQAE 315 Query: 629 PGDNVGFNVKNVSVKELRRGYV 694 PGD +G ++ + K++RRG V Sbjct: 316 PGDQLGVLLRGLGPKDVRRGCV 337 >U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor protein 4, isoformc protein. Length = 267 Score = 60.1 bits (139), Expect = 4e-09 Identities = 33/52 (63%), Positives = 37/52 (71%) Frame = +2 Query: 80 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKK 235 GEFEAGISKNGQTREHALLA TLGVKQL V+ T P S R + I++ Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTIQR 169 Score = 53.6 bits (123), Expect = 4e-07 Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Frame = +3 Query: 225 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVNA 401 +S +S +SR+ TI RL LS TE TC P CHGSRDG L+ +KE L Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETLPERP 210 Query: 402 LLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLE 500 R TPS A LT SVF + T+S LE Sbjct: 211 SSRLLTPSSHHNAQLTDHSVFHSRMCTRSEELE 243 >U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation factor (ef-tu), mitochondrialprotein 2 protein. Length = 439 Score = 58.8 bits (136), Expect = 9e-09 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 5/201 (2%) Frame = +2 Query: 113 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFV 292 QT+EH +LA +GVK + + +NK D E E + ++ E + G+N Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFN------- 196 Query: 293 PISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKC---LIEALDAILPPARPTDKALRL 463 GD P +G + EG+ + C LI+ALD++ P R + Sbjct: 197 ------GD-------ATPVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVM 242 Query: 464 PLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA--PANITTEVKSVEMHHEALQEAVPGD 637 P+ I G GTV VG +E G+LK G V + T +++ ++++E GD Sbjct: 243 PIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGD 302 Query: 638 NVGFNVKNVSVKELRRGYVAG 700 + G + V ++RG AG Sbjct: 303 HCGVLCRGVKGDTVKRGMWAG 323 >AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial elongation factorTu homologue protein. Length = 439 Score = 58.8 bits (136), Expect = 9e-09 Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 5/201 (2%) Frame = +2 Query: 113 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFV 292 QT+EH +LA +GVK + + +NK D E E + ++ E + G+N Sbjct: 148 QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGFN------- 196 Query: 293 PISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKC---LIEALDAILPPARPTDKALRL 463 GD P +G + EG+ + C LI+ALD++ P R + Sbjct: 197 ------GD-------ATPVIRGSALSALEGQ-DISCIERLIDALDSLPEPDRNEKDTFVM 242 Query: 464 PLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA--PANITTEVKSVEMHHEALQEAVPGD 637 P+ I G GTV VG +E G+LK G V + T +++ ++++E GD Sbjct: 243 PIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVFGKSVKEVRAGD 302 Query: 638 NVGFNVKNVSVKELRRGYVAG 700 + G + V ++RG AG Sbjct: 303 HCGVLCRGVKGDTVKRGMWAG 323 >L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding protein protein. Length = 593 Score = 58.0 bits (134), Expect = 2e-08 Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 7/238 (2%) Frame = +2 Query: 110 GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAF 289 G T+EH LA +L V +V V K+D P Y EE K ++ ++ P V Sbjct: 268 GTTKEHLSLALSLHVPVYLV-VTKIDMC-PAYI---LEETMKNITRLVRSAKKLPILVRN 322 Query: 290 VPISGWHGDNMLEPSTKM-PWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDK--ALR 460 + N PS K+ P F+ V EG L+ ++P R ++ Sbjct: 323 MDDCVHAAVNF--PSKKVCPIFQ---VSNVEGT--NLPLLRQFLNMVPLRRQLNENDPAH 375 Query: 461 LPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAV 628 + D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + Sbjct: 376 FQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVGIVK 435 Query: 629 PGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 802 G + F +K + K++R+G V D K P F A+++VL+HP I Y +L Sbjct: 436 CGQSASFALKKIPKKDVRQGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML 492 >AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis gtp-binding proteinprotein 1 protein. Length = 613 Score = 58.0 bits (134), Expect = 2e-08 Identities = 56/238 (23%), Positives = 103/238 (43%), Gaps = 7/238 (2%) Frame = +2 Query: 110 GQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAF 289 G T+EH LA +L V +V V K+D E + I + V S KK+ Sbjct: 267 GTTKEHLSLALSLHVPVYLV-VTKIDMCPANILEETMKNITRLVRS-AKKL--------- 315 Query: 290 VPISGWHGDNMLEPSTKMPWFKGW-LVERKEGKAEGKCLIEALDAILPPARPTDK--ALR 460 PI + D+++ + P K + + + L+ I+P R ++ Sbjct: 316 -PILVRNMDDVVHAAVNFPSKKVCPIFQVSNVEGTNLPLLRQFLNIVPLRRQLNENDPAH 374 Query: 461 LPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAV 628 + D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + Sbjct: 375 FQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVK 434 Query: 629 PGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQISNGYTPVL 802 G + F +K + K++R+G V D K P F A+++VL+HP I Y +L Sbjct: 435 CGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLHHPTTIKPNYQAML 491 >Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical protein C47B2.7b protein. Length = 500 Score = 43.6 bits (98), Expect = 4e-04 Identities = 48/181 (26%), Positives = 77/181 (42%) Frame = +2 Query: 113 QTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFV 292 QT EH LLA ++I+ +NK D E +S+ E K+V +K +G + + Sbjct: 112 QTAEHLLLASKFCPNRVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENS---- 163 Query: 293 PISGWHGDNMLEPSTKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQ 472 PI +E S +FK +++ K IE+ I P R + + + Sbjct: 164 PI--------VEMSLADGYFKEEMLQNL------KLAIES--RIFEPKRDEEGEFLIAID 207 Query: 473 DVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFN 652 + I G GTV G V G+L+ T + F N VK++E + + + G F Sbjct: 208 HCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLETWKQRVGQVAAGARAAFL 267 Query: 653 V 655 V Sbjct: 268 V 268 >Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical protein T04H1.2 protein. Length = 588 Score = 38.3 bits (85), Expect = 0.014 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%) Frame = +2 Query: 467 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITT----EVKSVEMHHEALQEAVPG 634 ++++Y + +G V G + G L G V+ P T V S+ +A+ PG Sbjct: 407 IEELYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRSRQAVGCVNPG 466 Query: 635 DNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNH 766 + ++ LRRG V + + PP +FTA +++L H Sbjct: 467 EAASISLNLPDGVSLRRGMVLAEIDHQPP-VCYEFTANLLLLCH 509 >Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical protein C47B2.7a protein. Length = 459 Score = 35.5 bits (78), Expect = 0.10 Identities = 21/78 (26%), Positives = 33/78 (42%) Frame = +2 Query: 422 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEM 601 I P R + + + + I G GTV G V G+L+ T + F N VK++E Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209 Query: 602 HHEALQEAVPGDNVGFNV 655 + + + G F V Sbjct: 210 WKQRVGQVAAGARAAFLV 227 >Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical protein F35C5.4 protein. Length = 172 Score = 31.1 bits (67), Expect = 2.2 Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 3/97 (3%) Frame = -3 Query: 759 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPG-TASCRASWCISTDLT 583 ST T A+ + P ++ P + T +S + S R S +S D T Sbjct: 4 STATVAIIQSEPSTSSSSSPSSSRPEDGATVGNTFTQSSAVSESQSTSERTSRSVSPDST 63 Query: 582 SVVMLAGAKTTTVPGFR--IPVSTLPTGTVPIPPILY 478 V + +TVP + VST PT +PPI Y Sbjct: 64 PVRVTTSTLLSTVPTSQDISGVSTAPTTKATLPPITY 100 >U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1 x-hybridizingprotein 1, isoform b protein. Length = 1169 Score = 30.7 bits (66), Expect = 2.8 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = -3 Query: 630 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 481 G + CR WCI D S+++ G + P +P T P VP+PP L Sbjct: 546 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 593 >U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1 x-hybridizingprotein 1, isoform a protein. Length = 1876 Score = 30.7 bits (66), Expect = 2.8 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = -3 Query: 630 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 481 G + CR WCI D S+++ G + P +P T P VP+PP L Sbjct: 643 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 690 >U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore complex protein protein11 protein. Length = 805 Score = 30.3 bits (65), Expect = 3.8 Identities = 23/81 (28%), Positives = 32/81 (39%) Frame = -3 Query: 750 TCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCISTDLTSVVM 571 T A +AAP GGLF + T P T T +P TA+ + T + Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAATLGQTPSTVSATPSLP 527 Query: 570 LAGAKTTTVPGFRIPVSTLPT 508 + T+T+P P PT Sbjct: 528 TTTSTTSTLPK---PAEATPT 545 Score = 29.5 bits (63), Expect = 6.6 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%) Frame = -3 Query: 759 STMTCAVKSAAPLGGLFFESPAT*PRRNSLTDTFLTLKPTLSPGTASCRAS--WCISTDL 586 ++ T S AP GGLF + T P + T T +P T +T Sbjct: 447 ASSTTTPASTAPTGGLFGAATTTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTT 506 Query: 585 TSVVMLAGAKTTTVPGF-RIPVSTLPTGTVPIP 490 + G +TV +P +T T T+P P Sbjct: 507 PATAATLGQTPSTVSATPSLPTTTSTTSTLPKP 539 >U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caenorhabditis elegansN2 basic-helix-loop-helix transcription factor E12/47homolog mRNA, complete cds. ). Length = 399 Score = 30.3 bits (65), Expect = 3.8 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%) Frame = -3 Query: 702 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 544 +P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAXSSMYTWPQTY 163 Query: 543 PGFRIP 526 PG+ P Sbjct: 164 PGYLPP 169 >AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set (trithorax/polycomb) domaincontaining protein 27 protein. Length = 502 Score = 30.3 bits (65), Expect = 3.8 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Frame = -2 Query: 505 YCSNTADFVYVLQGKTESLV-SGASRRKDGVEGLNKAFTFSLSFFTLN-QPSLEPWHFGG 332 Y + + F Y L ++ + A RRKD + +++ F N P L W G Sbjct: 207 YRTISRQFCYFLLAIAKNKIYEAAQRRKDARNAMETPIFYNVPFNVANFTPKLYFWAVGV 266 Query: 331 RLQHVISVPARNGYESDGSRIV 266 V VP+ N DG+ ++ Sbjct: 267 VTTRVNMVPSENQVGEDGNPVI 288 >Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical protein M05B5.5a protein. Length = 399 Score = 29.9 bits (64), Expect = 5.0 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%) Frame = -3 Query: 702 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 544 +P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163 Query: 543 PGFRIP 526 PG+ P Sbjct: 164 PGYLPP 169 >Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical protein M05B5.5a protein. Length = 399 Score = 29.9 bits (64), Expect = 5.0 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%) Frame = -3 Query: 702 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 544 +P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163 Query: 543 PGFRIP 526 PG+ P Sbjct: 164 PGYLPP 169 >U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription factor E12/47 homolog protein. Length = 399 Score = 29.9 bits (64), Expect = 5.0 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%) Frame = -3 Query: 702 SPAT*PRRNSLTDTFLTLKPTLSPGTASCRASWCIS----TDLTSVVMLAGAKTT---TV 544 +P+T P S TD L LKPT +P T S S ++ T+LT+ + + T T Sbjct: 105 APSTAPAPTSTTDV-LELKPTTAPATNSAETSAIVAPQPLTNLTAPIDAMSSMYTWPQTY 163 Query: 543 PGFRIP 526 PG+ P Sbjct: 164 PGYLPP 169 >AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical protein F49D11.10 protein. Length = 766 Score = 29.5 bits (63), Expect = 6.6 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +2 Query: 536 KPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 661 KPGT+ F P ITTE K H L+ + GD +++ Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397 >U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical protein C33G8.8 protein. Length = 346 Score = 29.1 bits (62), Expect = 8.7 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Frame = -3 Query: 618 CRASWCISTDLTSVVMLAGAKTTTV----PGFRIPVSTLPTGTVP 496 CR CI+T +T + + V PG+ +STLPT +P Sbjct: 55 CRMEKCIATGMTMCKVQGNREKNKVRGYYPGYLPVISTLPTSVIP 99 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 30,689,225 Number of Sequences: 27780 Number of extensions: 651353 Number of successful extensions: 1921 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 1731 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1903 length of database: 12,740,198 effective HSP length: 85 effective length of database: 10,378,898 effective search space used: 4390273854 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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