Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F12_e574_12.seq
         (1568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            29   2.3  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    28   3.1  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    28   4.0  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    27   7.1  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   7.1  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    27   7.1  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    27   9.3  

>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 165 LPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADI 272
           +  V  D C+R  D+ +P  I  +YQ  +P + AD+
Sbjct: 77  MATVSEDKCLRLWDSTQPDKIELLYQKNIPKRCADL 112


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 23/109 (21%), Positives = 47/109 (43%)
 Frame = +3

Query: 75   EAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVP 254
            E +   D A+D  +  +    ++ LA   L    +PDA      AD P    +V +L   
Sbjct: 1083 EDIVSLDRAQDYAETVEQPEVWSRLAKAQLDGIRIPDAIESYLKADDPSNYSEVIELASR 1142

Query: 255  NKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAG 401
              + + ++ +     ++    D+   L   L+   K+ Q+T+++ +L G
Sbjct: 1143 AGKYEELIKYLLMARSKMHEPDVDSAL---LIAYAKTNQLTEMETFLIG 1188


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 267 DIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL 395
           DIV  F      ++  K  +   +T+LVD   SK +T+I  YL
Sbjct: 228 DIVFGFWNNIIEKRFSKSFIDSYLTRLVDIAISKNVTEIMYYL 270


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 662 ENVFNSTGXEWKIQKRLFTQNNIGQTKFYFECIHKVDNVLFIFV-ECITSSF 510
           E +F++      I  ++F +++I    F+  C H V N LF+F    IT+SF
Sbjct: 17  EVLFSAISFGISIYIKVFGRSSI--VTFFLLCFHLVPNALFLFPWTIITTSF 66


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -2

Query: 202 VQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTASCRIXCSP 53
           V+R + SGS+ G S    SA    A S     SLA + P+ A+  + C P
Sbjct: 123 VRRLRTSGSSTGLSNAPPSANVSKASSNLSLASLAKTQPERATPEV-CVP 171


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -2

Query: 775 TIXNRTYPDFPTNALNTTPPXKIRIRRNSSMQGSDTVKRTCLTAPARNGRSRSDF 611
           T  N  +PD   NA   TPP    +  N+S     T+  + +T  A N  +   F
Sbjct: 15  TPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSF 69


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = -2

Query: 355 LSTNCVISGITRXXXXXXXXXXXSKETTISACLFGT---LS**TSPMA*GL-SASVQRTQ 188
           ++TN V + I++           S  TT S+    +   +S  +S M+    SAS     
Sbjct: 413 INTNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAH 472

Query: 187 ASGSTAGSSPVRASAA-YPLARSQAWCKSLAAS 92
           +SGS++GSS   +SA+ + L+R   +   LA S
Sbjct: 473 SSGSSSGSSSATSSASTFNLSRFYVFAGILAIS 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,904,864
Number of Sequences: 5004
Number of extensions: 70406
Number of successful extensions: 223
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 884049604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)