Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_F12_e574_12.seq
(1568 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228... 33 0.62
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 31 3.3
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230... 30 5.7
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 30 5.7
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 29 7.6
>10_08_0824 +
20821724-20822137,20822457-20822543,20822729-20822829,
20822917-20822967,20823616-20823790,20823878-20824192,
20824504-20824707,20824799-20825314,20825400-20825609,
20826092-20826280,20827254-20827405,20827685-20827837,
20827925-20828006,20828086-20828475
Length = 1012
Score = 33.1 bits (72), Expect = 0.62
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 282 FETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL-AGHTSKYPYPILYDTDLKLKS 458
FET + E S D L+T+++DNL + + Y + TS Y YP L D + L
Sbjct: 540 FETKAALENSSSDDDSQLLTRIIDNLVDESHESNQTYSDSNDTSLYNYPSLSDWN-DLNE 598
Query: 459 SKLHFDDKERYE 494
++ F+D ER E
Sbjct: 599 VEI-FEDIERRE 609
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 30.7 bits (66), Expect = 3.3
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +3
Query: 66 IRHEAVSGTDAAKDLHQACDLARGYAALALTG--LLPAVLPDACVRCTDADKPHAIGDVY 239
+++E + GT K +H AC + + + LTG L P +P R D A G++Y
Sbjct: 474 VQYENIRGTFTIKPVHFACSDSSPCSGITLTGVQLRPVQIPH--YRLNDPFCWQAFGELY 531
Query: 240 QLKVPNKQADIVVSFETTQSNEQSYKDL 323
VP + + +N QSY DL
Sbjct: 532 TPTVP--PIACLHLGKPAGNNLQSYHDL 557
>11_06_0495 -
24319531-24320831,24320923-24321109,24322919-24323062,
24324467-24324469
Length = 544
Score = 29.9 bits (64), Expect = 5.7
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 652 NTFS*QCLSLASMSFVLFEFXLAALYSKRLL--ENLGMFD 765
NTF+ C +LASM+ +L + LA + L E+LG+ D
Sbjct: 92 NTFAFACATLASMTTILMGYNLALMSGAELFIREDLGLAD 131
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 29.9 bits (64), Expect = 5.7
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Frame = +3
Query: 447 KLKSSKLHFDDKERYERM-PFVKTGCDTFDKYEKNVIDFMD---TLKIKLGL----SNIV 602
+LKS KLH +D+E ++ PFVK + ++V+ L IKL L N
Sbjct: 1739 RLKSIKLHKNDEELLSKLDPFVKLLAECLSSKHESVLSISFRCLALLIKLPLPSLKDNAN 1798
Query: 603 LSEKSLLDLPFRAGAVKHVLLT 668
L + L+D+ RAG L+T
Sbjct: 1799 LIKNVLMDIAQRAGNSNGHLVT 1820
>03_05_0944 +
29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 29.5 bits (63), Expect = 7.6
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -2
Query: 763 RTYPDFPTNALNTTPPXKIRIRRNSSMQGSDTVKRTCLTAPARNGRSRSDFSLKTILDKP 584
R Y D T++ + P K R +SS+ +T K T TAPA ++ + + +L +
Sbjct: 791 RAYDDQDTDSAQSGAPTKSDRRESSSIGKRETGKSTKKTAPADKAKTAKEEARDLLLKEE 850
Query: 583 SFI 575
+ +
Sbjct: 851 ASV 853
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,404,782
Number of Sequences: 37544
Number of extensions: 468607
Number of successful extensions: 1244
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5070121196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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