Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F12_e574_12.seq
         (1568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.9  
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)                  31   3.3  
SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)                31   3.3  
SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021)                    30   4.4  

>SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
 Frame = +3

Query: 243 LKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKYPY 422
           ++V     D+V  FET  +NE   +  + P     V  L  K   D K    GHT     
Sbjct: 1   MEVEKSPTDVVQEFETLAANEVKKERRIAPGEAHFVWKLIQKHGEDYKAERLGHTCVLMS 60

Query: 423 PILYDTDLKLKSSKLHFDDKER-YERMP-FVKTGCDTFDKYEKNVIDFM 563
              Y        SK    DKE  Y+  P  +K  C+ F +  ++  +++
Sbjct: 61  FAGYTFSHAPLYSKAMSKDKENYYQHTPKQLKRKCEAFLRSSQDFSEYL 109


>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
          Length = 1420

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 294 QSNEQSYKDLVMPLITQLVDNLKSKQITD 380
           + N+Q Y+DL +P+ + L  N++ KQ+ +
Sbjct: 293 KGNKQQYRDLEIPISSDLAANMREKQVAE 321


>SB_59527| Best HMM Match : DUF382 (HMM E-Value=4.1e-26)
          Length = 800

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 754 PDFPTNALNTTPPXKIRIRRNSSMQGSDTV-KRTCLTAPARNGRSRSDFSLKTILDKPSF 578
           PD PT     TP  +    +  S   SDT+ +++ +TAP    +S  +   KT+ + P  
Sbjct: 73  PDEPTQEAQETPQAEEDSPKTDSSSSSDTIEEQSGVTAPTEEVQSVENVLTKTVGESPPS 132

Query: 577 I 575
           I
Sbjct: 133 I 133


>SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021)
          Length = 567

 Score = 30.3 bits (65), Expect = 4.4
 Identities = 25/79 (31%), Positives = 32/79 (40%)
 Frame = -1

Query: 290 SFEGDDNICLLVWHFELINVSDGVRLVRVGAAHASVRQHSRQQSREGQRRVSSRQVTGLV 111
           SF  DD+ C + W        DG   V      A+  +  R  SREG    SS +V GL 
Sbjct: 190 SFPWDDHHCRISWR------GDGQYFVVSAIEPATDARKLRVWSREGVLMTSSEEVDGLE 243

Query: 110 QVLSGVCSGHRLVPNXLQP 54
           Q L    SG  +     +P
Sbjct: 244 QSLCWKPSGSLIASTQRKP 262


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,142,779
Number of Sequences: 59808
Number of extensions: 543955
Number of successful extensions: 1312
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5129408549
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)