Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_F12_e574_12.seq
(1568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 30 3.9
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 30 3.9
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 30 3.9
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 30 3.9
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 30 3.9
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 30 3.9
Z92826-8|CAI79117.1| 325|Caenorhabditis elegans Hypothetical pr... 29 9.0
Z81475-12|CAI79149.1| 325|Caenorhabditis elegans Hypothetical p... 29 9.0
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 30.3 bits (65), Expect = 3.9
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 237 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKY 416
Y L++PN Q + ++ SN+ D L +L D+ K K +I L T K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDKVKPEIVSGLIPTTVKQ 4413
Query: 417 PYPILYDTDLK--LKSSKLHFDDKE 485
++ +K +K K + + KE
Sbjct: 4414 GETATFNVKVKGPVKQVKWYKNGKE 4438
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 30.3 bits (65), Expect = 3.9
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 237 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKY 416
Y L++PN Q + ++ SN+ D L +L D+ K K +I L T K
Sbjct: 3714 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDKVKPEIVSGLIPTTVKQ 3773
Query: 417 PYPILYDTDLK--LKSSKLHFDDKE 485
++ +K +K K + + KE
Sbjct: 3774 GETATFNVKVKGPVKQVKWYKNGKE 3798
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 30.3 bits (65), Expect = 3.9
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 237 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKY 416
Y L++PN Q + ++ SN+ D L +L D+ K K +I L T K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDKVKPEIVSGLIPTTVKQ 4413
Query: 417 PYPILYDTDLK--LKSSKLHFDDKE 485
++ +K +K K + + KE
Sbjct: 4414 GETATFNVKVKGPVKQVKWYKNGKE 4438
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 30.3 bits (65), Expect = 3.9
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 237 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKY 416
Y L++PN Q + ++ SN+ D L +L D+ K K +I L T K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDKVKPEIVSGLIPTTVKQ 4413
Query: 417 PYPILYDTDLK--LKSSKLHFDDKE 485
++ +K +K K + + KE
Sbjct: 4414 GETATFNVKVKGPVKQVKWYKNGKE 4438
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 30.3 bits (65), Expect = 3.9
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 237 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKY 416
Y L++PN Q + ++ SN+ D L +L D+ K K +I L T K
Sbjct: 3714 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDKVKPEIVSGLIPTTVKQ 3773
Query: 417 PYPILYDTDLK--LKSSKLHFDDKE 485
++ +K +K K + + KE
Sbjct: 3774 GETATFNVKVKGPVKQVKWYKNGKE 3798
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 30.3 bits (65), Expect = 3.9
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +3
Query: 237 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKY 416
Y L++PN Q + ++ SN+ D L +L D+ K K +I L T K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDKVKPEIVSGLIPTTVKQ 4413
Query: 417 PYPILYDTDLK--LKSSKLHFDDKE 485
++ +K +K K + + KE
Sbjct: 4414 GETATFNVKVKGPVKQVKWYKNGKE 4438
>Z92826-8|CAI79117.1| 325|Caenorhabditis elegans Hypothetical
protein C18D11.7 protein.
Length = 325
Score = 29.1 bits (62), Expect = 9.0
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 372 ITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFD 533
I D K ++A + P I Y + +K+ HF ER E PF + DT+D
Sbjct: 39 IKDRKFHIAAFFKETP-EIEYQSSVKIWFKDEHFSYYERSEPFPFEEKCEDTYD 91
>Z81475-12|CAI79149.1| 325|Caenorhabditis elegans Hypothetical
protein C18D11.7 protein.
Length = 325
Score = 29.1 bits (62), Expect = 9.0
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +3
Query: 372 ITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFD 533
I D K ++A + P I Y + +K+ HF ER E PF + DT+D
Sbjct: 39 IKDRKFHIAAFFKETP-EIEYQSSVKIWFKDEHFSYYERSEPFPFEEKCEDTYD 91
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,988,700
Number of Sequences: 27780
Number of extensions: 402075
Number of successful extensions: 1089
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4535578426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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