Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F12_e574_12.seq
         (1568 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g04620.1 68415.m00470 cation efflux family protein potential ...    32   0.90 
At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A...    30   4.8  
At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR ...    29   8.4  

>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 32.3 bits (70), Expect = 0.90
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
 Frame = -2

Query: 805 HRXXVQGVPVTIXNRTYPDFPTNALNTTPPXKIRIRRNSSMQGSDTVKRTCLTAPARNGR 626
           HR     VP     RTYP FP     T  P K R+  +SS +     K +          
Sbjct: 12  HRPNRLSVPQPTIGRTYPSFPYTP--TPTPSKTRLSSSSSYRSIHGSKSSLSFLFLILFS 69

Query: 625 SRSDFSLKTIL-DKPSFILSVSIKSITFFSYLSNVSHPVLT 506
            RS +SL   L   PSF L      ++  S+L ++S  +++
Sbjct: 70  LRSLYSLLPFLRSSPSFSLFPFSFLVSLLSFLFSLSFTIIS 110


>At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A19)
           Identical to Cytochrome P450 (SP:Q9T0K0) [Arabidopsis
           thaliana]; similar to cytochrome P450LXXIA1, Persea
           americana, M32885
          Length = 490

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 728 YNAAXQNSNKTKLIDARLRHCQENVFNSTGXEWKIQKRLFTQN 600
           Y+    N  KTK+ID  LR  ++  F   G  WK  K +  QN
Sbjct: 93  YDVICANRPKTKVIDKILRGGRDVAFAPYGEYWKQMKSICIQN 135


>At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 884

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 219 HAIGDVYQLKVPNKQADIVVSFETTQS-NEQSYKDLVMPLITQLVDNLKSKQITDIKIY 392
           + IG+    K   ++ D  V   TT + N  + K+ ++P++    DNL+S+ +    +Y
Sbjct: 355 NVIGETMACKKTTQEWDRAVDVSTTYAANFGAVKERILPILKYSYDNLESESVKTCFLY 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,707,098
Number of Sequences: 28952
Number of extensions: 366659
Number of successful extensions: 924
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4221703296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)