Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_F11_e566_11.seq
(1546 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 308 1e-84
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 150 4e-37
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 137 3e-33
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 118 2e-27
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 2e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 81 4e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 75 3e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 70 8e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 4e-05
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 28 3.0
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 4.0
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 27 6.9
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 27 9.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 308 bits (756), Expect = 1e-84
Identities = 143/163 (87%), Positives = 151/163 (92%)
Frame = +3
Query: 87 RXKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC 266
+ KLCYVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E
Sbjct: 213 KEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENA 272
Query: 267 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 446
GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+AP
Sbjct: 273 GIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAP 332
Query: 447 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 575
PERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 333 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 150 bits (364), Expect = 4e-37
Identities = 69/163 (42%), Positives = 104/163 (63%)
Frame = +3
Query: 87 RXKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC 266
+ K CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G EA
Sbjct: 218 KEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEAS 277
Query: 267 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 446
G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++ ++KI A
Sbjct: 278 GLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYAS 337
Query: 447 PERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 575
PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 338 PERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 137 bits (332), Expect = 3e-33
Identities = 70/166 (42%), Positives = 106/166 (63%), Gaps = 12/166 (7%)
Frame = +3
Query: 87 RXKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC 266
+ KLCYV+ D E + + ++ L ++Y LPDG+VI +G+ER+ CPE LFQP +G E
Sbjct: 213 KEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQP 272
Query: 267 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL--------APST 422
G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI L P+
Sbjct: 273 GLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPAR 332
Query: 423 M---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 548
+ K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 333 LPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 118 bits (285), Expect = 2e-27
Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 11/148 (7%)
Frame = +3
Query: 138 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYN 290
A +SS K +E PDG G ERFR E LF PSF + G+HE Y
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 291 SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYS 464
SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + + +
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390
Query: 465 VWIGGSILASLSTFQQMWISKQEYDESG 548
VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 391 VWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 2e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = +3
Query: 267 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 446
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 447 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 572
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 81.0 bits (191), Expect = 4e-16
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
Frame = +3
Query: 69 IRHEXSRXKL--CYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 242
I HE R KL CY D+ +T + + + QV+ + NERF PE LF P
Sbjct: 235 ICHEKPRSKLEICYALPDY----STGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSP 290
Query: 243 SFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST 422
S + + GI E S+ +I+ L N V GG +PG R+ E+ +LAP+
Sbjct: 291 SDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPAN 350
Query: 423 MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 569
++K+ P + W S + L + I++ EY E G +I+ RK
Sbjct: 351 WEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 74.9 bits (176), Expect = 3e-14
Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 19/182 (10%)
Frame = +3
Query: 78 EXSRXKLCYVALDFEQEMATAASSSS--LEKSYELPDGQVITI--GNERFRCPEALFQPS 245
E + + CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 238 ERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPE 297
Query: 246 FLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST 422
+ + E N + +D+RK LY N VLSGG+T++ +R+Q+++ +
Sbjct: 298 IASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDER 357
Query: 423 --------------MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 560
+ + +I+ ++ +VW GGS+LA F +K +Y+E G SI
Sbjct: 358 IHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIA 417
Query: 561 HR 566
R
Sbjct: 418 RR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.1 bits (164), Expect = 8e-13
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = +3
Query: 207 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 386
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 387 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 560
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 4e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +3
Query: 321 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 491
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 492 SLSTFQQMWISKQEYDESGPSIVHRK 569
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 28.3 bits (60), Expect = 3.0
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +3
Query: 30 ALXTSGXPPGLQXIRHEXSRXKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNE 209
AL T+ P +E CYV+ +E + + SL SY +PD + I +
Sbjct: 16 ALTTNFSFPSYDLSFNETEHGVFCYVSRPLTKERSCSHPYISLGSSYGIPDAENIEYPRD 75
Query: 210 -RFRCP 224
R+ P
Sbjct: 76 ARYHSP 81
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +3
Query: 468 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 569
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.1 bits (57), Expect = 6.9
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = -3
Query: 386 TVGNTRVHGGTTRQYCVGVQVFTDVNVTLHDGVVCRLVDATSFHTQERGLEESLWATEP 210
T+G+ +GG GV V T VTLH G C + D T L+ + W P
Sbjct: 227 TLGDDWPNGGEI-DIVEGVNVGTSNQVTLHTGDGCEMEDIKRVMT-GTALQTNCWVDAP 283
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 419 GWSEGCDFLLHTVGNTRVHGGT 354
GW+ D +LH G V GGT
Sbjct: 240 GWTTPKDLILHLAGKLTVRGGT 261
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,265,502
Number of Sequences: 5004
Number of extensions: 75563
Number of successful extensions: 216
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 868192212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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