Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F10_e558_12.seq
         (1539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    78   3e-15
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa...    74   5e-14
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    28   3.0  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   9.1  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   9.1  

>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 45/90 (50%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
 Frame = +3

Query: 129 FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRR 308
           FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R++   + YRR
Sbjct: 64  FYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPAAPR---AGRPEPRERSSAADAGYRR 120

Query: 309 APPAGAPHDKKAD-VGPGSADVEFRGGFGR 395
           A       +KK D   PG     FRGGFGR
Sbjct: 121 A-------EKKDDGAAPGGFAPSFRGGFGR 143


>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 74.1 bits (174), Expect = 5e-14
 Identities = 43/89 (48%), Positives = 50/89 (56%)
 Frame = +3

Query: 129 FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRR 308
           FY+ LTNEG+EYLR +LHLP E+VPAT KR VR    R    GRP+   R + D + YRR
Sbjct: 64  FYYTLTNEGVEYLREYLHLPAEVVPATHKRQVRPTAPR---AGRPEPRERASAD-AGYRR 119

Query: 309 APPAGAPHDKKADVGPGSADVEFRGGFGR 395
           A        K     P      FRGGFGR
Sbjct: 120 A------EKKDEGAAPSGFAPSFRGGFGR 142


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 250 QLAGLMLQHEQLKIDQLIGAHHQLELLMIRRLMS 351
           Q AGL+  HE L+  ++  AH +  LL +R+ ++
Sbjct: 758 QEAGLIAMHEDLEAKEICQAHFKTALLALRKAIT 791


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +3

Query: 474 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 638
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 639 SCA 647
           S A
Sbjct: 232 SDA 234


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 581 PPFASWRNSEEARTDRPSQQLRSLN 655
           PP AS RN  E  +  PS+Q  S+N
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,528,577
Number of Sequences: 5004
Number of extensions: 82296
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 864227864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)