Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 030725E6_F10_e558_12.seq
(1539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 76 7e-14
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 73 8e-13
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 71 3e-12
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 31 3.2
11_06_0294 + 22022630-22024006,22024109-22024234,22024319-220244... 30 4.2
11_06_0278 - 21854859-21855101,21855529-21855587,21855684-218557... 30 4.2
09_02_0036 + 3217163-3217584,3217752-3218322 30 4.2
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 30 5.6
03_03_0217 + 15500943-15502196 29 7.4
03_06_0519 - 34481751-34482722 29 9.8
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 76.2 bits (179), Expect = 7e-14
Identities = 47/114 (41%), Positives = 64/114 (56%), Gaps = 13/114 (11%)
Frame = +3
Query: 96 DMLRNSSHGRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--TETVRRGAVG-RPD 266
+ +R + +H+YWYLTN+GIE+LR +L+LP E+VP TLK+S + + G G RP
Sbjct: 53 EYVRETFSWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSAKPPSRPFGSGPPGDRPR 112
Query: 267 APARTAEDRSAY-----RRAPPAGAPHDKKADVGPGSADVE--FRG---GFGRG 398
P R DR + R P GAP D + G A+ + FRG GFGRG
Sbjct: 113 GPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRGSRPGFGRG 166
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 72.5 bits (170), Expect = 8e-13
Identities = 48/116 (41%), Positives = 63/116 (54%), Gaps = 15/116 (12%)
Frame = +3
Query: 96 DMLRNSSHGRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPD 266
+ +R + +++YWYLTN+GIE+LR +L+LP EIVPATLK+S R G G RP
Sbjct: 53 EYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPR 112
Query: 267 APARTAEDRSAY-----RRAPPAGAPHDKKADVGPGSADVE--FRG-----GFGRG 398
P R DR + R P GAP D + G A+ + FR GFGRG
Sbjct: 113 GPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRG 168
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 70.5 bits (165), Expect = 3e-12
Identities = 44/106 (41%), Positives = 58/106 (54%), Gaps = 8/106 (7%)
Frame = +3
Query: 96 DMLRNSSHGRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT--ETVRRGAVG-RPD 266
+ +R + +++YWYLTN+GIE+LR +L+LP EIVPATLK+S R G G RP
Sbjct: 53 EYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPR 112
Query: 267 APARTAEDRSAY-----RRAPPAGAPHDKKADVGPGSADVEFRGGF 389
P R DR + R P GAP D + G A EF+ F
Sbjct: 113 GPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGE--KGGAPAEFQPSF 156
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 30.7 bits (66), Expect = 3.2
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 274 AGASGLPTAPRRTVSVRTDLFRVAGTISGGKCRKI 170
A A G P P + VR L+ T GG CR +
Sbjct: 3 AAAGGAPPRPAAGIRVRVPLYMTGQTYQGGSCRGV 37
>11_06_0294 +
22022630-22024006,22024109-22024234,22024319-22024423,
22024525-22024659,22024798-22024847,22026487-22026545,
22026819-22026928,22027941-22028174,22028278-22028377,
22028699-22028829,22029834-22029914,22029970-22030128
Length = 888
Score = 30.3 bits (65), Expect = 4.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 560 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 703
L+R + PF SW N +A D+ + L LNG + + LK L
Sbjct: 399 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 446
>11_06_0278 -
21854859-21855101,21855529-21855587,21855684-21855711,
21855812-21856702,21856792-21857011,21857638-21857687,
21863174-21863284,21863379-21863483,21863568-21863693,
21863796-21865187
Length = 1074
Score = 30.3 bits (65), Expect = 4.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 560 LNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWQIVSVNILLKFAL 703
L+R + PF SW N +A D+ + L LNG + + LK L
Sbjct: 404 LSRPSRQDPFTSWDNMRQACLDKGTHALGKLNGRAAALIEKVNLKRGL 451
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 4.2
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +3
Query: 498 ITIHWPSFYNVV-TGKTLALPNLIALQH 578
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 29.9 bits (64), Expect = 5.6
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = -3
Query: 397 PLPKPPLNSTSAEPGP-----TSAFLSXXXXXXXXXXXADLSSAVRAGASGLPT 251
PLP+PP TSA P P + L+ LS+++ A A LPT
Sbjct: 3 PLPRPPPTPTSAAPAPCPRQIAAVVLNHPSSALTPASTRSLSASLLAVAPSLPT 56
>03_03_0217 + 15500943-15502196
Length = 417
Score = 29.5 bits (63), Expect = 7.4
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Frame = +3
Query: 198 VPATLKRSVRTETVRRGAVGRPDAPARTAEDR--SAYRRAPPAGAPHDK-----KADVGP 356
+P LKR + + R +V APA + R SA R A P + +A GP
Sbjct: 262 LPERLKREIEEAKLLRRSVSAVTAPAAASSGRWASAASRTMSAARPSRRWSALLRALSGP 321
Query: 357 GSADVEFRGGFGRGRSAP 410
+D++ GG GR R AP
Sbjct: 322 RYSDMDGGGGGGR-RVAP 338
>03_06_0519 - 34481751-34482722
Length = 323
Score = 29.1 bits (62), Expect = 9.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 240 RRGAVGRPDAPARTAEDRSAYRRAPP-AGAPHDKKADVGPGSAD 368
R+G G PA ++ + RR+ AGAP D A+ GP S +
Sbjct: 23 RKGKRGAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAGPSSTN 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,467,630
Number of Sequences: 37544
Number of extensions: 654141
Number of successful extensions: 1868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1867
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4954100116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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