Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F10_e558_12.seq
         (1539 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...    75   1e-13
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...    68   2e-11
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...    67   3e-11
At3g20780.1 68416.m02628 topoisomerase 6 subunit B (TOP6B) nearl...    30   3.5  
At3g49650.1 68416.m05426 kinesin motor protein-related several k...    29   8.2  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score = 74.9 bits (176), Expect = 1e-13
 Identities = 44/108 (40%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
 Frame = +3

Query: 96  DMLRNSSHGRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVG-RPDAP 272
           + +R +    H+YW+LTNEGI++LR +L+LP EIVPATLK+  +      G  G RP  P
Sbjct: 54  EYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGP 113

Query: 273 -----ARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRGR 401
                 R   DR  YR  P +G  +  KA   P      FRGG G  R
Sbjct: 114 PRGDGERRFGDRDGYRGGPKSGGEYGDKAG-APADYQPGFRGGAGGAR 160


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score = 67.7 bits (158), Expect = 2e-11
 Identities = 41/112 (36%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
 Frame = +3

Query: 96  DMLRNSSHGRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGAV--GRPDA 269
           + +R +    H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +      G     R   
Sbjct: 53  EYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRG 112

Query: 270 PARTA------EDRSAYRRAPPAGAPHDKKADVGPGSADVEFRG---GFGRG 398
           P           DR  YR  P AG     +    P      F+G   GFGRG
Sbjct: 113 PRHEGGDRPRFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQGSGRGFGRG 164


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score = 66.9 bits (156), Expect = 3e-11
 Identities = 41/110 (37%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
 Frame = +3

Query: 96  DMLRNSSHGRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR--------TETVRRGA 251
           + +R +    H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +            R+  
Sbjct: 53  EYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRG 112

Query: 252 VGRPDAPARTAEDRSAYRRAPPAG-APHDKKADVGPGSADVEFRGGFGRG 398
             R D       DR  YR  P  G       AD  P       R GFGRG
Sbjct: 113 PPRSDGDRPRFGDRDGYRGGPRGGDEKGGAPADFQPSFQGGGGRPGFGRG 162


>At3g20780.1 68416.m02628 topoisomerase 6 subunit B (TOP6B) nearly
           identical to topoisomerase 6 subunit B [Arabidopsis
           thaliana] GI:12331188
          Length = 670

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = -1

Query: 480 ELGTGPPLEXXXXXFTYIFLLKLRVQIDLFRNLL*IQHQLNQGRHQPSYHEELQLVVRAD 301
           ++ TG P+E      +  ++   R+ ID+ RN+  I     +G  +  +  E+Q+V+  +
Sbjct: 204 KMSTGLPIEISSSMKSQNYVTFCRLDIDIHRNIPHIHLHEKKGNKEKWHGAEIQVVIEGN 263

Query: 300 KLIY 289
              Y
Sbjct: 264 WTTY 267


>At3g49650.1 68416.m05426 kinesin motor protein-related several
           kinesin-like proteins
          Length = 813

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = +3

Query: 219 SVRTETVRRGAVGRPDAPARTA-----EDRSAYRRAPPAGAPHDKKADVGPGSADVEFRG 383
           S R  TVR G+   P APA  +       +  +  +P +G    K +  G  S    +RG
Sbjct: 737 SPRAVTVRNGSYNTPLAPAAVSTKGARNQQRVFGTSPLSGTKGVKNSSYGQNSHTKLYRG 796

Query: 384 GFGRGRS 404
           G  +G S
Sbjct: 797 GGTKGHS 803


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,981,144
Number of Sequences: 28952
Number of extensions: 474037
Number of successful extensions: 1026
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,070,560
effective HSP length: 84
effective length of database: 9,638,592
effective search space used: 4125317376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)