Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F09_e550_11.seq
         (1578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...   115   2e-26
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    40   7e-04
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    28   4.1  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    27   9.4  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score =  115 bits (276), Expect = 2e-26
 Identities = 58/125 (46%), Positives = 78/125 (62%), Gaps = 2/125 (1%)
 Frame = +1

Query: 106 TYNALVLSTESSVVVYGNLEAVPEGKSAPGGHELTVDYWELIGLAPPGGADAI--LNXEA 279
           +Y+ + L  ES+V +YG ++ +PEGKSAPG HEL VDY++++  AP G       LN EA
Sbjct: 184 SYDFINLGPESTVCLYGVIKELPEGKSAPGNHELVVDYYQILHAAPTGEEAFTNRLNAEA 243

Query: 280 LPDVQXDNRHIMIRGENTSKVLRARAAVTXAFREHFXSRRYTXVSXPTLXQTQCEGGXTL 459
            P    D RH++IRGE  S VL+ RA    A R+ F + + T V+ P + QTQ EGG TL
Sbjct: 244 EPSYLLDQRHLVIRGETASSVLKVRARALRAMRDTFENLKMTEVTPPCMVQTQVEGGATL 303

Query: 460 FKX*Y 474
           FK  Y
Sbjct: 304 FKFNY 308


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +1

Query: 286 DVQXDNRHIMIRGENTSKVLRARAAVTXAFREHFXSRRYTXVSXPTLXQTQCEGGXTLFK 465
           D + DNR + +R      +   +A +  AFRE   S  +  +  P +     EGG  +FK
Sbjct: 235 DTRLDNRVLDLRTPTNQAIFDIQAGICQAFREFLLSNSFNEIHTPKMSGASSEGGSNVFK 294

Query: 466 X*YXR 480
             Y +
Sbjct: 295 IQYFK 299


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 24  LVDAPFSAGIRHEAGFLQCVVAWCPLSDIQCSSAF 128
           L+D PF   +  E GF +      P SD  C  AF
Sbjct: 177 LIDTPFPGALDSEFGFDESQAPLFPASDGDCQRAF 211


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 268 NXEALPDVQXDNRHIMI--RGENTSKVLRARAAVTXAFREHFXSRRYTXV 411
           N ++ PD    + HI+   RG+  SKV+ A+       RE   +RR T +
Sbjct: 751 NNQSTPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTAL 800


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,912
Number of Sequences: 5004
Number of extensions: 33212
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 889996126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)