Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F09_e550_11.seq
         (1578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335...    39   0.009
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212...    32   1.4  
11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960     31   3.3  
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936...    30   5.8  
05_04_0292 + 19893895-19894983                                         29   7.6  

>02_05_0343 +
           28132348-28132878,28133256-28133366,28133477-28133590,
           28134077-28134367,28134447-28134557,28134658-28134711,
           28135587-28135666,28135749-28135864,28136491-28136605,
           28136740-28136788,28136984-28137106
          Length = 564

 Score = 39.1 bits (87), Expect = 0.009
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = +1

Query: 286 DVQXDNRHIMIRGENTSKVLRARAAVTXAFREHFXSRRYTXVSXPTLXQTQCEGGXTLFK 465
           D + + R I +R      + R +  V   FRE+F S+ +  +  P L     EGG  +FK
Sbjct: 225 DTRLNYRAIDLRTPANQAIFRIQCQVENKFREYFLSKNFVGIHSPKLIAGSSEGGAAVFK 284

Query: 466 X*Y 474
             Y
Sbjct: 285 LQY 287


>02_01_0316 +
           2125283-2125687,2125768-2125881,2125986-2126099,
           2126271-2126561,2126658-2126768,2127317-2127370,
           2127555-2127634,2127912-2128027,2128141-2128382
          Length = 508

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 286 DVQXDNRHIMIRGENTSKVLRARAAVTXAFREHFXSRRYTXVSXPTLXQTQCEGGXTLFK 465
           D + D R I +R      + R +  +   FR+   S  +  +  P L     EGG  +FK
Sbjct: 184 DKRLDFRVIDLRTPANQAIFRVQCEIENIFRQVLLSEGFVGIHTPKLIGGSSEGGAAVFK 243

Query: 466 X*Y 474
             Y
Sbjct: 244 LDY 246


>11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960
          Length = 122

 Score = 30.7 bits (66), Expect = 3.3
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 445 PRTXSARGSXGSLXCTGATXSVRGRRASPRPERGAPS 335
           P+T   RG  G+   + ++ S    R+SP P RGAPS
Sbjct: 51  PKTKQPRGVKGTRRPSWSSWSSTASRSSPPPGRGAPS 87


>06_01_1133 +
           9364842-9364850,9364929-9365048,9365157-9365476,
           9366267-9366428,9367151-9367235,9367352-9367501,
           9367588-9367635,9367705-9367773,9367897-9368600,
           9369426-9369561,9369636-9369856,9370355-9370486,
           9371316-9371406,9371878-9371925,9372004-9372132,
           9372357-9372626
          Length = 897

 Score = 29.9 bits (64), Expect = 5.8
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 29  GCPLFCRNSXRGRLLTVCRCMVSSVRHTML*CFRLNRQ 142
           GCP  C+N  RG     C C  S  R     CF  +R+
Sbjct: 675 GCPKMCKNRFRG-----CHCAKSQCRSRQCPCFAADRE 707


>05_04_0292 + 19893895-19894983
          Length = 362

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -3

Query: 253 LXQEVPAQSAPNNQQSVHDHPG----LIFLPALPRGYRKQQLTIQSKALEHCMS 104
           L Q VPA + P +  ++HD PG     ++LP +    R+  + +Q      C+S
Sbjct: 58  LMQPVPAYAEPRDGHTLHDLPGEPNLRVYLPEVALAERRLPVVVQLHGGGFCIS 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,934
Number of Sequences: 37544
Number of extensions: 273454
Number of successful extensions: 728
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 5104927520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)