Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F09_e550_11.seq
         (1578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32795| Best HMM Match : tRNA_anti (HMM E-Value=4.8e-11)             48   3e-05
SB_20789| Best HMM Match : GATA (HMM E-Value=7.4)                      30   5.9  

>SB_32795| Best HMM Match : tRNA_anti (HMM E-Value=4.8e-11)
          Length = 305

 Score = 47.6 bits (108), Expect = 3e-05
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +1

Query: 85  LHGVLCQTYNALVLSTESSVVVYGNLEAVPEGKS 186
           L  VLC TY ALVL TE++V +YG ++AVPEGKS
Sbjct: 218 LTDVLCHTYEALVLCTEATVCLYGVVKAVPEGKS 251



 Score = 30.7 bits (66), Expect = 3.4
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 202 ELTVDYWELIGLAPPGGADAILNXEALPDVQXDNRHIMIRGE 327
           E TV  + ++   P G +++ +      D Q DNRHIM+RGE
Sbjct: 234 EATVCLYGVVKAVPEGKSESAI------DTQLDNRHIMLRGE 269



 Score = 29.5 bits (63), Expect = 7.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 346 RARAAVTXAFREHFXSRRYTXVSXPTLXQTQCEGGXTLFKX*Y 474
           ++ +A+           R   ++ P + QTQ EGG TLFK  Y
Sbjct: 250 KSESAIDTQLDNRHIMLRGETLTPPCMVQTQVEGGSTLFKFNY 292


>SB_20789| Best HMM Match : GATA (HMM E-Value=7.4)
          Length = 471

 Score = 29.9 bits (64), Expect = 5.9
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 97  LCQTYNALVLSTESSVVVYGN-LEAVPEGKSAPGGHELTVDYWELIGLAPPGGAD 258
           LC  YN +   T S+  +    L A   G+  PG H +  D W++I     GG D
Sbjct: 367 LCCLYNTIKRRTLSNFFISRQKLNAPVCGEVIPGFHVIFQDIWDVISKHRKGGVD 421


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,844,228
Number of Sequences: 59808
Number of extensions: 299523
Number of successful extensions: 533
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 5164621880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)