Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030725E6_F09_e550_11.seq
         (1578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical p...   170   2e-42
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    44   3e-04
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr...    29   9.0  
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ...    29   9.0  

>Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical
           protein F22D6.3a protein.
          Length = 545

 Score =  170 bits (414), Expect = 2e-42
 Identities = 79/126 (62%), Positives = 97/126 (76%)
 Frame = +1

Query: 85  LHGVLCQTYNALVLSTESSVVVYGNLEAVPEGKSAPGGHELTVDYWELIGLAPPGGADAI 264
           L+  LCQ+Y+A+ LSTE+SV VYG ++A+P+GKSAP GHELTVDYWE+IG AP GG D +
Sbjct: 156 LNDKLCQSYDAVTLSTETSVQVYGIIKALPDGKSAPDGHELTVDYWEVIGKAPAGGIDNV 215

Query: 265 LNXEALPDVQXDNRHIMIRGENTSKVLRARAAVTXAFREHFXSRRYTXVSXPTLXQTQCE 444
           LN  A  DV  DNRH++IRGEN S++LR RAA T A R+HF +  YT V+ PTL QTQ E
Sbjct: 216 LNESAGVDVMLDNRHLVIRGENASRILRIRAAATRAMRDHFFAAGYTEVAPPTLVQTQVE 275

Query: 445 GGXTLF 462
           GG TLF
Sbjct: 276 GGSTLF 281


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 44.0 bits (99), Expect = 3e-04
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +1

Query: 283 PDVQXDNRHIMIRGENTSKVLRARAAVTXAFREHFXSRRYTXVSXPTLXQTQCEGGXTLF 462
           PD      H+  R    + +LRAR+A+     E F SR +  +  P L +  CEGG  +F
Sbjct: 99  PDNLRKKTHLRARNSKFAALLRARSAIFRETHEFFMSRDFIHIDTPKLTRNDCEGGGEVF 158


>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical
           protein K08E7.9 protein.
          Length = 1321

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 321 RXEYIEGAPRSGRGDARLPRTLXVAPVHXSEPSDPRADXVRG 446
           R   I+ + ++GR D ++   + V  VH + PS P    +RG
Sbjct: 395 RKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRG 436


>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
           protein.
          Length = 1321

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 321 RXEYIEGAPRSGRGDARLPRTLXVAPVHXSEPSDPRADXVRG 446
           R   I+ + ++GR D ++   + V  VH + PS P    +RG
Sbjct: 395 RKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRG 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,756,790
Number of Sequences: 27780
Number of extensions: 212068
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 85
effective length of database: 10,378,898
effective search space used: 4566715120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)